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NACC1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.9 nTPM
HPA:15.9 nTPM
GTEx:23.5 nTPM
FANTOM5:38.9 Scaled Tags Per Million
Pig:57.1 nTPM
Mouse:40.9 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 15.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.5
2586 Male, age 75, left hemisphere 35.0
2666 Male, age 74, left hemisphere 23.5
2219 Male, age 76, both hemispheres 19.0
2828 Female, age 72, unknown 17.4
1833 Male, age 53, unknown 15.1
2019 Male, age 18, unknown 12.4
1827 Male, age 72, unknown 11.3
1830 Male, age 51, unknown 10.6
1870 Female, age 42, unknown 7.5
2411 Female, age 72, unknown 2.9
Dorsal raphe nucleus
nTPM: 6.6
2750 Male, age 76, both hemispheres 10.6
2047 Male, age 72, unknown 8.5
1828 Male, age 53, unknown 6.9
2016 Female, age 72, unknown 5.6
2298 Female, age 72, unknown 1.6
Inferior colliculus
nTPM: 5.5
2849 Male, age 72, unknown 10.3
1890 Male, age 53, unknown 5.4
1848 Female, age 42, unknown 5.3
2097 Female, age 72, unknown 0.9
Median raphe nucleus
nTPM: 10.8
2220 Male, age 76, midline 10.8
Pedunculopontine tegmental nucleus
nTPM: 8.9
2334 Male, age 80, both hemispheres 14.9
2338 Male, age 61, both hemispheres 8.3
1921 Female, age 85, both hemispheres 3.3
Periaquaductal grey, anterior
nTPM: 12.8
1947 Male, age 18, unknown 16.4
1795 Male, age 51, unknown 13.1
2502 Female, age 75, unknown 9.0
Periaquaductal grey, dorsal
nTPM: 4.8
1831 Male, age 72, unknown 7.1
2850 Male, age 76, both hemispheres 7.1
1840 Male, age 53, unknown 2.6
2464 Female, age 72, unknown 2.5
Periaquaductal grey, lateral
nTPM: 2.2
2053 Male, age 18, unknown 2.6
2140 Male, age 76, both hemispheres 2.4
2272 Male, age 74, both hemispheres 1.5
Pretectal area
nTPM: 11.2
2007 Male, age 72, unknown 18.4
1944 Female, age 72, unknown 17.7
1815 Male, age 53, unknown 17.3
1816 Male, age 51, unknown 17.3
1817 Female, age 42, unknown 17.0
2407 Male, age 75, both hemispheres 16.0
2667 Female, age 75, unknown 9.1
2825 Male, age 18, unknown 7.2
2316 Male, age 76, right hemisphere 1.6
2224 Female, age 72, unknown 1.0
2273 Male, age 74, both hemispheres 0.3
Red nucleus
nTPM: 12.0
2584 Male, age 75, left hemisphere 22.3
2785 Male, age 18, unknown 16.3
1865 Male, age 51, unknown 12.2
2823 Male, age 76, right hemisphere 11.8
1954 Female, age 42, unknown 11.7
1904 Male, age 53, unknown 11.0
2227 Male, age 72, unknown 10.7
1821 Female, age 72, unknown 10.6
2588 Male, age 74, left hemisphere 10.3
2769 Male, age 72, unknown 9.5
2725 Female, age 75, unknown 9.0
2503 Female, age 72, unknown 8.3
Substantia nigra
nTPM: 15.9
2583 Male, age 75, right hemisphere 28.0
1916 Female, age 42, unknown 24.8
2665 Male, age 74, both hemispheres 23.2
1941 Male, age 53, unknown 18.2
1851 Male, age 51, unknown 16.5
2699 Male, age 18, unknown 14.8
1889 Female, age 72, unknown 13.4
2590 Female, age 75, unknown 10.9
2241 Male, age 72, unknown 8.3
2409 Female, age 72, unknown 0.7
Superior colliculus
nTPM: 12.9
2664 Male, age 75, both hemispheres 27.3
2668 Female, age 75, unknown 26.8
1796 Male, age 53, unknown 13.5
1839 Male, age 51, unknown 12.2
2087 Female, age 72, unknown 11.9
1913 Female, age 42, unknown 10.4
2261 Male, age 18, unknown 10.1
1995 Male, age 72, unknown 8.1
2587 Male, age 74, left hemisphere 5.2
1895 Male, age 76, right hemisphere 3.7
Ventral tegmental area
nTPM: 13.2
2223 Female, age 72, unknown 19.4
2218 Male, age 76, both hemispheres 17.8
1915 Female, age 42, unknown 15.6
2410 Female, age 72, unknown 12.3
1942 Male, age 51, unknown 8.7
2021 Male, age 53, unknown 5.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 23.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.5
Samples: 139

Max nTPM: 34.5
Min nTPM: 11.1
Std nTPM: 4.7
Median nTPM: 22.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 34.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 34.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 34.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 33.7
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 32.6
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 32.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 32.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 32.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 31.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 31.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 31.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 38.9
FF:10158-103A5 76 years, female 38.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 57.1
Pig sample Sample description nTPM
Midbrain
nTPM: 57.1
Samples: 4

Max nTPM: 75.0
Min nTPM: 41.9
Sample A Female 75.0
Sample B Female 41.9
Sample C Male 64.5
Sample D Male 46.9
Periaqueductal gray
nTPM: 41.5
Samples: 3

Max nTPM: 45.8
Min nTPM: 37.5
Sample B Female 41.1
Sample C Male 45.8
Sample D Male 37.5
Substantia nigra
nTPM: 54.5
Samples: 4

Max nTPM: 64.2
Min nTPM: 42.1
Sample A Female 58.7
Sample B Female 42.1
Sample C Male 64.2
Sample D Male 52.9
Superior colliculi
nTPM: 51.7
Samples: 4

Max nTPM: 59.1
Min nTPM: 36.4
Sample A Female 54.2
Sample B Female 36.4
Sample C Male 59.1
Sample D Male 57.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 40.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 40.9
Samples: 4

Max nTPM: 41.9
Min nTPM: 39.3
Sample A Male 41.6
Sample B Male 39.3
Sample C Female 40.9
Sample D Female 41.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
69530672 Antisense, RP_050421_04_C10, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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