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VPS28
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:0.1 nTPM
HPA:0.1 nTPM
GTEx:127.9 nTPM
FANTOM5:46.3 Scaled Tags Per Million
Pig:25.9 nTPM
Mouse:210.0 nTPM
Allen mouse:7.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA024688Antibody HPA024745
Glial cells LowNot detected
Neuronal cells MediumNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 0.1
Sample id Sample description nTPM
Hippocampus
nTPM: 0.1
1898 Male, age 80, left hemisphere 0.3
2621 Female, age 67, right hemisphere 0.2
2148 Female, age 91, left hemisphere 0.1
1855 Male, age 76, left hemisphere 0.0
1911 Female, age 85, right hemisphere 0.0
2529 Female, age 94, left hemisphere 0.0
Dentate gyrus
nTPM: 0.0
1927 Female, age 91, both hemispheres 0.2
2010 Male, age 76, both hemispheres 0.0
2246 Female, age 85, both hemispheres 0.0
2528 Male, age 74, both hemispheres 0.0
2530 Female, age 94, left hemisphere 0.0
2531 Female, age 67, both hemispheres 0.0
Entorhinal gyrus
nTPM: 0.1
1787 Male, age 76, left hemisphere 0.3
1938 Female, age 85, left hemisphere 0.2
2613 Female, age 94, left hemisphere 0.1
2764 Male, age 80, right hemisphere 0.1
2117 Female, age 91, right hemisphere 0.0
2686 Male, age 75, right hemisphere 0.0
Hippocampus, CA1
nTPM: 0.1
2045 Male, age 76, both hemispheres 0.3
2082 Female, age 91, right hemisphere 0.1
1873 Female, age 85, both hemispheres 0.0
2527 Male, age 74, both hemispheres 0.0
2749 Male, age 80, left hemisphere 0.0
Hippocampus, CA2
nTPM: 0.0
1892 Male, age 76, both hemispheres 0.0
1940 Female, age 85, left hemisphere 0.0
1963 Male, age 80, left hemisphere 0.0
2113 Female, age 91, right hemisphere 0.0
2249 Male, age 74, both hemispheres 0.0
2437 Female, age 94, left hemisphere 0.0
Hippocampus, CA3
nTPM: 0.0
1867 Male, age 76, both hemispheres 0.0
1891 Female, age 85, both hemispheres 0.0
2137 Male, age 80, left hemisphere 0.0
2436 Male, age 74, both hemispheres 0.0
2620 Female, age 94, left hemisphere 0.0
2861 Female, age 67, both hemispheres 0.0
Parahippocampal cortex
nTPM: 0.0
2018 Male, age 76, both hemispheres 0.6
2622 Female, age 67, right hemisphere 0.1
1850 Male, age 80, both hemispheres 0.0
1933 Female, age 85, both hemispheres 0.0
1990 Female, age 91, right hemisphere 0.0
2245 Female, age 91, both hemispheres 0.0
2250 Female, age 67, right hemisphere 0.0
2532 Female, age 72, left hemisphere 0.0
2692 Male, age 74, both hemispheres 0.0
2693 Female, age 94, both hemispheres 0.0
Perirhinal gyrus
nTPM: 0.1
1847 Female, age 91, left hemisphere 0.3
1841 Female, age 85, right hemisphere 0.1
1794 Male, age 80, right hemisphere 0.0
2521 Female, age 94, right hemisphere 0.0
2848 Male, age 76, right hemisphere 0.0
Subiculum
nTPM: 0.0
1901 Male, age 80, both hemispheres 0.2
1977 Female, age 85, both hemispheres 0.0
2042 Male, age 76, both hemispheres 0.0
2438 Female, age 94, left hemisphere 0.0
2619 Male, age 74, both hemispheres 0.0
2729 Female, age 91, right hemisphere 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 127.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 127.9
Samples: 197

Max nTPM: 207.1
Min nTPM: 71.1
Std nTPM: 24.4
Median nTPM: 126.6
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 207.1
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 205.7
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 203.5
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 200.2
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 198.0
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 194.2
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 183.5
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 180.8
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 178.8
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 175.7
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 169.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 46.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 46.3
FF:10169-103B7 60 years, female 50.2
FF:10153-102I9 76 years, female 42.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 25.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 25.9
Samples: 4

Max nTPM: 34.6
Min nTPM: 20.2
Sample A Female 34.6
Sample B Female 25.5
Sample C Male 23.4
Sample D Male 20.2
Entorhinal cortex
nTPM: 23.8
Samples: 4

Max nTPM: 25.2
Min nTPM: 20.6
Sample A Female 24.5
Sample B Female 25.0
Sample C Male 25.2
Sample D Male 20.6
Subiculum
nTPM: 23.6
Samples: 4

Max nTPM: 29.6
Min nTPM: 19.8
Sample A Female 29.6
Sample B Female 22.5
Sample C Male 22.3
Sample D Male 19.8
Ventral hippocampus
nTPM: 25.9
Samples: 4

Max nTPM: 31.5
Min nTPM: 18.4
Sample A Female 26.9
Sample B Female 18.4
Sample C Male 31.5
Sample D Male 26.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 210.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 203.9
Samples: 4

Max nTPM: 216.1
Min nTPM: 185.7
Sample A Male 185.7
Sample B Male 206.4
Sample C Female 216.1
Sample D Female 207.4
Hippocampal formation
nTPM: 210.0
Samples: 4

Max nTPM: 232.4
Min nTPM: 183.7
Sample A Male 232.4
Sample B Male 183.7
Sample C Female 210.8
Sample D Female 213.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 7.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.7
68321662 Antisense, RP_041130_02_H03, Mouse strain C57BL/6J (56 days, male) 7.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.