ABOUTMENU
HELP
NEWS
JOSD2
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.8 nTPM
HPA:34.8 nTPM
GTEx:68.1 nTPM
FANTOM5:25.3 Scaled Tags Per Million
Mouse:27.2 nTPM
Allen mouse:2.7 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.1
2411 Female, age 72, unknown 36.3
2586 Male, age 75, left hemisphere 36.0
2828 Female, age 72, unknown 34.9
2019 Male, age 18, unknown 34.7
1870 Female, age 42, unknown 31.1
1830 Male, age 51, unknown 30.8
1833 Male, age 53, unknown 30.6
1827 Male, age 72, unknown 30.3
2666 Male, age 74, left hemisphere 29.0
2219 Male, age 76, both hemispheres 27.3
Dorsal raphe nucleus
nTPM: 30.0
2750 Male, age 76, both hemispheres 34.8
2298 Female, age 72, unknown 30.9
1828 Male, age 53, unknown 29.5
2016 Female, age 72, unknown 28.7
2047 Male, age 72, unknown 26.1
Inferior colliculus
nTPM: 25.3
2097 Female, age 72, unknown 26.0
1890 Male, age 53, unknown 25.9
1848 Female, age 42, unknown 25.3
2849 Male, age 72, unknown 23.9
Median raphe nucleus
nTPM: 26.9
2220 Male, age 76, midline 26.9
Pedunculopontine tegmental nucleus
nTPM: 29.0
2334 Male, age 80, both hemispheres 30.8
2338 Male, age 61, both hemispheres 28.2
1921 Female, age 85, both hemispheres 28.1
Periaquaductal grey, anterior
nTPM: 30.6
1795 Male, age 51, unknown 32.0
1947 Male, age 18, unknown 30.1
2502 Female, age 75, unknown 29.6
Periaquaductal grey, dorsal
nTPM: 23.3
2464 Female, age 72, unknown 26.8
1831 Male, age 72, unknown 25.4
1840 Male, age 53, unknown 20.7
2850 Male, age 76, both hemispheres 20.3
Periaquaductal grey, lateral
nTPM: 24.8
2272 Male, age 74, both hemispheres 28.6
2053 Male, age 18, unknown 24.7
2140 Male, age 76, both hemispheres 21.1
Pretectal area
nTPM: 29.0
2007 Male, age 72, unknown 35.6
1817 Female, age 42, unknown 31.9
1815 Male, age 53, unknown 31.0
1816 Male, age 51, unknown 30.0
2273 Male, age 74, both hemispheres 29.5
2667 Female, age 75, unknown 28.4
1944 Female, age 72, unknown 28.0
2407 Male, age 75, both hemispheres 27.6
2825 Male, age 18, unknown 26.5
2316 Male, age 76, right hemisphere 26.2
2224 Female, age 72, unknown 24.3
Red nucleus
nTPM: 34.8
2785 Male, age 18, unknown 39.2
2769 Male, age 72, unknown 38.5
2503 Female, age 72, unknown 38.1
2227 Male, age 72, unknown 36.5
1821 Female, age 72, unknown 36.1
1904 Male, age 53, unknown 35.9
1865 Male, age 51, unknown 34.9
1954 Female, age 42, unknown 34.1
2823 Male, age 76, right hemisphere 33.7
2588 Male, age 74, left hemisphere 32.6
2584 Male, age 75, left hemisphere 29.4
2725 Female, age 75, unknown 28.1
Substantia nigra
nTPM: 29.7
2583 Male, age 75, right hemisphere 33.6
1851 Male, age 51, unknown 33.3
1941 Male, age 53, unknown 32.3
1916 Female, age 42, unknown 32.2
1889 Female, age 72, unknown 30.8
2590 Female, age 75, unknown 30.0
2665 Male, age 74, both hemispheres 29.7
2699 Male, age 18, unknown 27.1
2409 Female, age 72, unknown 25.9
2241 Male, age 72, unknown 22.3
Superior colliculus
nTPM: 31.0
2668 Female, age 75, unknown 39.1
1913 Female, age 42, unknown 34.3
1995 Male, age 72, unknown 33.2
1796 Male, age 53, unknown 30.9
2587 Male, age 74, left hemisphere 30.1
2261 Male, age 18, unknown 29.9
2087 Female, age 72, unknown 29.2
1839 Male, age 51, unknown 28.1
2664 Male, age 75, both hemispheres 28.1
1895 Male, age 76, right hemisphere 26.8
Ventral tegmental area
nTPM: 30.2
2410 Female, age 72, unknown 33.4
2223 Female, age 72, unknown 32.1
1915 Female, age 42, unknown 30.9
2218 Male, age 76, both hemispheres 28.9
2021 Male, age 53, unknown 28.3
1942 Male, age 51, unknown 27.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 68.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 68.1
Samples: 139

Max nTPM: 196.3
Min nTPM: 23.2
Std nTPM: 23.6
Median nTPM: 63.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 196.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 179.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 147.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 122.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 116.6
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 114.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 112.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 101.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 100.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 95.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 95.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 25.3
FF:10158-103A5 76 years, female 25.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 27.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.2
Samples: 4

Max nTPM: 33.2
Min nTPM: 20.7
Sample A Male 33.2
Sample B Male 28.1
Sample C Female 20.7
Sample D Female 26.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.7
69015817 Antisense, RP_050315_01_G05, Mouse strain C57BL/6J (56 days, male) 2.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.