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PLCD3
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:50.5 nTPM
HPA:50.5 nTPM
GTEx:46.8 nTPM
FANTOM5:59.7 Scaled Tags Per Million
Pig:24.0 nTPM
Mouse:4.7 nTPM
Allen mouse:11.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 50.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.7
2586 Male, age 75, left hemisphere 84.1
2828 Female, age 72, unknown 68.7
2666 Male, age 74, left hemisphere 47.8
1827 Male, age 72, unknown 43.6
2411 Female, age 72, unknown 39.1
2019 Male, age 18, unknown 37.9
1870 Female, age 42, unknown 37.5
1830 Male, age 51, unknown 37.0
1833 Male, age 53, unknown 36.8
2219 Male, age 76, both hemispheres 34.2
Dorsal raphe nucleus
nTPM: 44.3
2016 Female, age 72, unknown 52.6
2298 Female, age 72, unknown 47.6
2047 Male, age 72, unknown 47.1
1828 Male, age 53, unknown 46.2
2750 Male, age 76, both hemispheres 28.1
Inferior colliculus
nTPM: 42.1
1848 Female, age 42, unknown 44.2
2849 Male, age 72, unknown 42.8
1890 Male, age 53, unknown 42.7
2097 Female, age 72, unknown 39.0
Median raphe nucleus
nTPM: 30.5
2220 Male, age 76, midline 30.5
Pedunculopontine tegmental nucleus
nTPM: 34.2
1921 Female, age 85, both hemispheres 36.3
2334 Male, age 80, both hemispheres 34.3
2338 Male, age 61, both hemispheres 31.9
Periaquaductal grey, anterior
nTPM: 48.5
2502 Female, age 75, unknown 53.7
1795 Male, age 51, unknown 51.3
1947 Male, age 18, unknown 40.4
Periaquaductal grey, dorsal
nTPM: 49.2
2850 Male, age 76, both hemispheres 54.1
1840 Male, age 53, unknown 53.5
1831 Male, age 72, unknown 44.7
2464 Female, age 72, unknown 44.5
Periaquaductal grey, lateral
nTPM: 49.8
2053 Male, age 18, unknown 59.9
2140 Male, age 76, both hemispheres 52.5
2272 Male, age 74, both hemispheres 36.9
Pretectal area
nTPM: 46.1
2407 Male, age 75, both hemispheres 59.6
1944 Female, age 72, unknown 53.7
1816 Male, age 51, unknown 51.3
2273 Male, age 74, both hemispheres 47.0
1815 Male, age 53, unknown 46.9
2825 Male, age 18, unknown 45.3
1817 Female, age 42, unknown 43.2
2007 Male, age 72, unknown 42.1
2667 Female, age 75, unknown 41.9
2316 Male, age 76, right hemisphere 41.5
2224 Female, age 72, unknown 34.1
Red nucleus
nTPM: 45.3
2584 Male, age 75, left hemisphere 53.9
2503 Female, age 72, unknown 50.7
2588 Male, age 74, left hemisphere 50.3
1954 Female, age 42, unknown 49.4
2785 Male, age 18, unknown 46.6
2227 Male, age 72, unknown 45.9
2769 Male, age 72, unknown 45.8
2725 Female, age 75, unknown 45.5
1904 Male, age 53, unknown 41.6
1865 Male, age 51, unknown 40.1
1821 Female, age 72, unknown 39.6
2823 Male, age 76, right hemisphere 34.6
Substantia nigra
nTPM: 41.3
2583 Male, age 75, right hemisphere 51.6
2699 Male, age 18, unknown 45.5
2590 Female, age 75, unknown 45.3
1851 Male, age 51, unknown 43.8
2665 Male, age 74, both hemispheres 43.3
1889 Female, age 72, unknown 40.8
1916 Female, age 42, unknown 40.5
1941 Male, age 53, unknown 35.8
2241 Male, age 72, unknown 33.9
2409 Female, age 72, unknown 32.9
Superior colliculus
nTPM: 50.5
2664 Male, age 75, both hemispheres 78.8
1995 Male, age 72, unknown 61.6
1913 Female, age 42, unknown 53.2
2087 Female, age 72, unknown 51.2
1796 Male, age 53, unknown 50.8
2261 Male, age 18, unknown 47.8
2587 Male, age 74, left hemisphere 45.0
1839 Male, age 51, unknown 42.5
2668 Female, age 75, unknown 42.2
1895 Male, age 76, right hemisphere 31.5
Ventral tegmental area
nTPM: 40.8
1942 Male, age 51, unknown 47.9
2021 Male, age 53, unknown 47.0
2410 Female, age 72, unknown 41.6
1915 Female, age 42, unknown 41.1
2223 Female, age 72, unknown 36.9
2218 Male, age 76, both hemispheres 30.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 46.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.8
Samples: 139

Max nTPM: 136.0
Min nTPM: 9.3
Std nTPM: 22.7
Median nTPM: 42.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 136.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 131.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 96.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 93.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 90.7
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 90.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 88.8
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 87.1
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 86.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 82.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 81.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 59.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 59.7
FF:10158-103A5 76 years, female 59.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.0
Pig sample Sample description nTPM
Midbrain
nTPM: 23.3
Samples: 4

Max nTPM: 46.3
Min nTPM: 15.0
Sample A Female 46.3
Sample B Female 15.0
Sample C Male 16.7
Sample D Male 15.3
Periaqueductal gray
nTPM: 20.3
Samples: 3

Max nTPM: 23.9
Min nTPM: 15.3
Sample B Female 15.3
Sample C Male 23.9
Sample D Male 21.7
Substantia nigra
nTPM: 24.1
Samples: 4

Max nTPM: 26.3
Min nTPM: 21.3
Sample A Female 25.6
Sample B Female 21.3
Sample C Male 23.1
Sample D Male 26.3
Superior colliculi
nTPM: 15.8
Samples: 4

Max nTPM: 18.2
Min nTPM: 12.6
Sample A Female 18.2
Sample B Female 12.6
Sample C Male 15.1
Sample D Male 17.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 4.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.7
Samples: 4

Max nTPM: 5.5
Min nTPM: 3.7
Sample A Male 5.5
Sample B Male 4.9
Sample C Female 4.5
Sample D Female 3.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.6
77620411 Antisense, RP_070205_01_G06, Mouse strain C57BL/6J (56 days, male) 11.7
227747 Antisense, RP_040609_01_D05, Mouse strain C57BL/6J (56 days, male) 11.4
276272 Antisense, RP_040609_01_D05, Mouse strain C57BL/6J (56 days, male) 8.3
77414915 Antisense, RP_070205_01_G06, Mouse strain C57BL/6J (56 days, male) 1.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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