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SENP3
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:42.6 nTPM
HPA:42.6 nTPM
GTEx:33.9 nTPM
FANTOM5:16.2 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA060290
Glial cells Not detected
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 42.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 41.4
1781 Male, age 74, unknown 43.0
2290 Female, age 72, unknown 42.8
2846 Female, age 79, unknown 41.5
2288 Male, age 75, left hemisphere 41.4
2289 Male, age 61, right hemisphere 41.3
1857 Female, age 85, left hemisphere 40.9
2481 Female, age 94, left hemisphere 40.3
1854 Male, age 80, left hemisphere 39.9
Claustrum
nTPM: 42.1
2645 Female, age 72, unknown 44.0
2284 Female, age 91, both hemispheres 43.3
2198 Male, age 80, both hemispheres 42.9
2568 Male, age 61, both hemispheres 42.7
2196 Female, age 79, unknown 41.4
2491 Male, age 75, both hemispheres 41.4
1956 Male, age 74, unknown 41.0
2292 Female, age 85, both hemispheres 41.0
2392 Female, age 94, both hemispheres 40.9
Globus pallidus, externus
nTPM: 40.8
2646 Male, age 61, right hemisphere 43.5
2567 Female, age 72, unknown 41.1
2395 Male, age 75, both hemispheres 40.0
2772 Female, age 79, unknown 39.8
1996 Male, age 80, right hemisphere 39.5
Globus pallidus, internus
nTPM: 40.9
2483 Female, age 94, right hemisphere 43.9
2287 Male, age 75, right hemisphere 43.0
2778 Female, age 91, both hemispheres 40.7
2111 Female, age 85, right hemisphere 40.5
2566 Female, age 72, unknown 40.3
2037 Male, age 80, right hemisphere 39.4
1818 Male, age 74, unknown 38.7
Nucleus accumbens
nTPM: 40.5
1783 Male, age 74, unknown 43.4
1806 Female, age 85, left hemisphere 41.9
1856 Female, age 91, right hemisphere 41.3
2286 Male, age 75, left hemisphere 40.5
2698 Female, age 72, unknown 40.0
2391 Female, age 94, left hemisphere 39.4
2824 Male, age 61, right hemisphere 39.4
2732 Male, age 80, right hemisphere 37.8
Nucleus basalis of Meynert
nTPM: 41.0
2569 Male, age 61, both hemispheres 44.3
2484 Female, age 94, left hemisphere 41.0
2821 Male, age 75, both hemispheres 39.3
2393 Male, age 80, right hemisphere 39.2
Nucleus of the diagonal band
nTPM: 41.9
2195 Female, age 85, both hemispheres 44.2
2775 Male, age 80, right hemisphere 43.5
2029 Male, age 61, right hemisphere 42.0
1812 Female, age 91, both hemispheres 40.8
1979 Male, age 74, unknown 39.0
Olfactory tubercle
nTPM: 42.6
2856 Male, age 75, right hemisphere 43.2
2487 Female, age 94, left hemisphere 43.1
1998 Female, age 91, both hemispheres 42.7
1846 Male, age 80, right hemisphere 41.2
Putamen
nTPM: 41.9
2647 Male, age 75, left hemisphere 44.9
2489 Female, age 72, unknown 43.6
2466 Female, age 79, unknown 42.2
1829 Male, age 74, unknown 40.9
1937 Female, age 91, right hemisphere 40.6
2482 Female, age 94, left hemisphere 40.5
1838 Male, age 80, right hemisphere 40.4
Septal nuclei
nTPM: 41.4
1960 Male, age 74, unknown 45.1
2031 Female, age 72, unknown 42.4
2059 Female, age 85, both hemispheres 42.2
2629 Female, age 94, right hemisphere 41.8
2009 Female, age 91, both hemispheres 40.4
2394 Male, age 61, left hemisphere 40.0
2199 Male, age 80, right hemisphere 37.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 33.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 33.1
Samples: 246

Max nTPM: 53.0
Min nTPM: 20.6
Std nTPM: 5.2
Median nTPM: 33.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 53.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 47.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 45.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 44.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 44.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 44.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 43.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 43.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 43.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 42.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 42.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 33.9
Samples: 246

Max nTPM: 54.7
Min nTPM: 18.4
Std nTPM: 5.8
Median nTPM: 33.3
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 54.7
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 50.6
GTEX-X4XX-0011-R6B-SM-46MWP 60-69 years, male 50.4
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 48.8
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 47.2
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 46.8
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 46.3
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 46.0
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 45.8
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 45.5
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 45.1
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Brain - Putamen (basal ganglia)
Average nTPM: 32.8
Samples: 205

Max nTPM: 55.2
Min nTPM: 22.8
Std nTPM: 5.0
Median nTPM: 32.6
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 55.2
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 48.5
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 47.3
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 45.7
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 45.2
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 44.3
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 43.8
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 42.1
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 41.7
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 41.7
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 41.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 14.7
FF:10164-103B2 76 years, female 14.7
Globus pallidus
Scaled Tags Per Million: 8.5
FF:10161-103A8 76 years, female 14.6
FF:10175-103C4 60 years, female 2.3
Nucleus accumbens
Scaled Tags Per Million: 16.2
FF:10037-101F1 23-56 years, mixed 16.2
Putamen
Scaled Tags Per Million: 12.0
FF:10176-103C5 60 years, female 12.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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