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JMJD8
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.8 nTPM
HPA:19.8 nTPM
GTEx:8.2 nTPM
FANTOM5:44.2 Scaled Tags Per Million
Pig:27.3 nTPM
Mouse:33.2 nTPM
Allen mouse:0.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 19.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 19.3
2481 Female, age 94, left hemisphere 21.0
1857 Female, age 85, left hemisphere 20.4
2290 Female, age 72, unknown 20.4
2846 Female, age 79, unknown 20.1
1854 Male, age 80, left hemisphere 19.3
1781 Male, age 74, unknown 18.4
2288 Male, age 75, left hemisphere 17.7
2289 Male, age 61, right hemisphere 16.7
Claustrum
nTPM: 18.4
2645 Female, age 72, unknown 20.5
2196 Female, age 79, unknown 18.7
2284 Female, age 91, both hemispheres 18.7
2392 Female, age 94, both hemispheres 18.7
1956 Male, age 74, unknown 18.6
2198 Male, age 80, both hemispheres 18.2
2491 Male, age 75, both hemispheres 17.7
2292 Female, age 85, both hemispheres 17.5
2568 Male, age 61, both hemispheres 17.1
Globus pallidus, externus
nTPM: 19.1
1996 Male, age 80, right hemisphere 19.4
2395 Male, age 75, both hemispheres 19.3
2772 Female, age 79, unknown 19.2
2646 Male, age 61, right hemisphere 19.0
2567 Female, age 72, unknown 18.5
Globus pallidus, internus
nTPM: 19.8
2483 Female, age 94, right hemisphere 23.1
2287 Male, age 75, right hemisphere 19.5
1818 Male, age 74, unknown 19.4
2037 Male, age 80, right hemisphere 19.3
2778 Female, age 91, both hemispheres 19.2
2111 Female, age 85, right hemisphere 18.9
2566 Female, age 72, unknown 18.8
Nucleus accumbens
nTPM: 19.4
2391 Female, age 94, left hemisphere 22.0
1806 Female, age 85, left hemisphere 19.9
2698 Female, age 72, unknown 19.9
1783 Male, age 74, unknown 19.4
1856 Female, age 91, right hemisphere 19.1
2732 Male, age 80, right hemisphere 18.7
2286 Male, age 75, left hemisphere 18.1
2824 Male, age 61, right hemisphere 18.0
Nucleus basalis of Meynert
nTPM: 18.6
2569 Male, age 61, both hemispheres 19.8
2821 Male, age 75, both hemispheres 18.7
2393 Male, age 80, right hemisphere 18.6
2484 Female, age 94, left hemisphere 17.3
Nucleus of the diagonal band
nTPM: 18.7
1812 Female, age 91, both hemispheres 20.0
1979 Male, age 74, unknown 19.6
2775 Male, age 80, right hemisphere 18.3
2029 Male, age 61, right hemisphere 18.1
2195 Female, age 85, both hemispheres 17.5
Olfactory tubercle
nTPM: 19.0
2487 Female, age 94, left hemisphere 19.7
1846 Male, age 80, right hemisphere 19.3
2856 Male, age 75, right hemisphere 18.8
1998 Female, age 91, both hemispheres 18.3
Putamen
nTPM: 19.4
2482 Female, age 94, left hemisphere 21.0
2647 Male, age 75, left hemisphere 20.5
2489 Female, age 72, unknown 20.1
1829 Male, age 74, unknown 19.1
2466 Female, age 79, unknown 18.8
1838 Male, age 80, right hemisphere 18.4
1937 Female, age 91, right hemisphere 17.9
Septal nuclei
nTPM: 18.3
2199 Male, age 80, right hemisphere 19.6
2009 Female, age 91, both hemispheres 18.9
1960 Male, age 74, unknown 18.8
2059 Female, age 85, both hemispheres 18.4
2031 Female, age 72, unknown 17.7
2394 Male, age 61, left hemisphere 17.4
2629 Female, age 94, right hemisphere 17.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 8.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 8.1
Samples: 246

Max nTPM: 17.8
Min nTPM: 0.0
Std nTPM: 3.7
Median nTPM: 8.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 17.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 17.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 16.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 16.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 15.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 15.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 15.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 15.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 15.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 15.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 14.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 8.2
Samples: 246

Max nTPM: 18.2
Min nTPM: 0.0
Std nTPM: 3.6
Median nTPM: 8.3
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 18.2
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 17.5
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 17.5
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 17.0
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 16.8
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 16.0
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 15.3
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 14.8
GTEX-13112-0011-R6b-SM-5DUVK 50-59 years, male 14.7
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 14.2
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 14.2
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Brain - Putamen (basal ganglia)
Average nTPM: 7.6
Samples: 205

Max nTPM: 17.2
Min nTPM: 0.0
Std nTPM: 3.7
Median nTPM: 7.9
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 17.2
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 16.5
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 15.7
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 14.8
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 14.7
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 14.2
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 14.0
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 13.9
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 13.8
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 13.7
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 13.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 34.2
FF:10164-103B2 76 years, female 34.2
Globus pallidus
Scaled Tags Per Million: 32.2
FF:10175-103C4 60 years, female 33.9
FF:10161-103A8 76 years, female 30.5
Nucleus accumbens
Scaled Tags Per Million: 44.2
FF:10037-101F1 23-56 years, mixed 44.2
Putamen
Scaled Tags Per Million: 38.1
FF:10176-103C5 60 years, female 38.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 27.3
Pig sample Sample description nTPM
Caudate
nTPM: 25.5
Samples: 4

Max nTPM: 30.9
Min nTPM: 20.6
Sample A Female 20.6
Sample B Female 25.9
Sample C Male 30.9
Sample D Male 24.5
Putamen
nTPM: 25.3
Samples: 4

Max nTPM: 29.1
Min nTPM: 20.5
Sample A Female 24.9
Sample B Female 20.5
Sample C Male 29.1
Sample D Male 26.5
Septum
nTPM: 27.3
Samples: 4

Max nTPM: 31.5
Min nTPM: 23.7
Sample A Female 24.7
Sample B Female 23.7
Sample C Male 31.5
Sample D Male 29.3
Ventral pallidum
nTPM: 23.4
Samples: 4

Max nTPM: 27.9
Min nTPM: 19.5
Sample A Female 19.5
Sample B Female 21.3
Sample C Male 27.9
Sample D Male 24.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 33.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 27.6
Samples: 4

Max nTPM: 29.1
Min nTPM: 24.0
Sample A Male 28.5
Sample B Male 24.0
Sample C Female 28.8
Sample D Female 29.1
Septum
nTPM: 33.2
Samples: 4

Max nTPM: 35.4
Min nTPM: 30.1
Sample A Male 30.1
Sample B Male 33.9
Sample C Female 35.4
Sample D Female 33.4
Ventral forebrain
nTPM: 31.0
Samples: 4

Max nTPM: 33.2
Min nTPM: 29.4
Sample A Male 29.4
Sample B Male 29.7
Sample C Female 33.2
Sample D Female 31.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
686213 Antisense, RP_040916_01_B11, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
686213 Antisense, RP_040916_01_B11, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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