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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:42.6 nTPM
HPA:42.6 nTPM
GTEx:26.2 nTPM
FANTOM5:72.9 Scaled Tags Per Million
Pig:43.0 nTPM
Mouse:74.0 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody CAB013088
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 42.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 39.3
2481 Female, age 94, left hemisphere 46.2
2288 Male, age 75, left hemisphere 43.6
1854 Male, age 80, left hemisphere 39.6
2846 Female, age 79, unknown 38.6
2290 Female, age 72, unknown 38.4
1857 Female, age 85, left hemisphere 36.0
2289 Male, age 61, right hemisphere 35.9
1781 Male, age 74, unknown 35.8
Claustrum
nTPM: 34.0
2645 Female, age 72, unknown 35.6
2198 Male, age 80, both hemispheres 35.1
2196 Female, age 79, unknown 34.8
2392 Female, age 94, both hemispheres 34.2
2568 Male, age 61, both hemispheres 33.8
2491 Male, age 75, both hemispheres 33.7
2284 Female, age 91, both hemispheres 33.3
2292 Female, age 85, both hemispheres 33.2
1956 Male, age 74, unknown 32.6
Globus pallidus, externus
nTPM: 42.1
1996 Male, age 80, right hemisphere 45.7
2772 Female, age 79, unknown 45.2
2395 Male, age 75, both hemispheres 41.9
2646 Male, age 61, right hemisphere 39.2
2567 Female, age 72, unknown 38.5
Globus pallidus, internus
nTPM: 42.6
2483 Female, age 94, right hemisphere 45.7
1818 Male, age 74, unknown 43.8
2287 Male, age 75, right hemisphere 43.8
2037 Male, age 80, right hemisphere 42.9
2778 Female, age 91, both hemispheres 42.9
2111 Female, age 85, right hemisphere 40.0
2566 Female, age 72, unknown 39.5
Nucleus accumbens
nTPM: 37.3
2286 Male, age 75, left hemisphere 44.8
2391 Female, age 94, left hemisphere 41.5
2698 Female, age 72, unknown 36.8
1856 Female, age 91, right hemisphere 36.7
2732 Male, age 80, right hemisphere 36.2
1783 Male, age 74, unknown 34.9
1806 Female, age 85, left hemisphere 34.9
2824 Male, age 61, right hemisphere 32.4
Nucleus basalis of Meynert
nTPM: 40.4
2821 Male, age 75, both hemispheres 41.6
2484 Female, age 94, left hemisphere 41.1
2569 Male, age 61, both hemispheres 39.7
2393 Male, age 80, right hemisphere 39.3
Nucleus of the diagonal band
nTPM: 37.0
1812 Female, age 91, both hemispheres 39.5
2775 Male, age 80, right hemisphere 38.4
1979 Male, age 74, unknown 37.9
2195 Female, age 85, both hemispheres 36.1
2029 Male, age 61, right hemisphere 33.0
Olfactory tubercle
nTPM: 37.4
1846 Male, age 80, right hemisphere 39.3
2856 Male, age 75, right hemisphere 38.8
1998 Female, age 91, both hemispheres 36.3
2487 Female, age 94, left hemisphere 35.1
Putamen
nTPM: 39.1
2482 Female, age 94, left hemisphere 47.1
2489 Female, age 72, unknown 39.8
2647 Male, age 75, left hemisphere 39.3
2466 Female, age 79, unknown 38.6
1829 Male, age 74, unknown 37.9
1937 Female, age 91, right hemisphere 35.6
1838 Male, age 80, right hemisphere 35.1
Septal nuclei
nTPM: 38.1
2199 Male, age 80, right hemisphere 40.8
1960 Male, age 74, unknown 38.5
2394 Male, age 61, left hemisphere 37.6
2059 Female, age 85, both hemispheres 37.5
2031 Female, age 72, unknown 37.4
2009 Female, age 91, both hemispheres 37.3
2629 Female, age 94, right hemisphere 37.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 26.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 26.2
Samples: 246

Max nTPM: 44.9
Min nTPM: 16.9
Std nTPM: 4.5
Median nTPM: 25.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 44.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 40.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 39.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 39.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 38.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 37.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 37.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 36.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 35.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 35.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 34.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 22.4
Samples: 246

Max nTPM: 37.5
Min nTPM: 12.3
Std nTPM: 4.2
Median nTPM: 21.8
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 37.5
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 36.9
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 36.5
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 35.7
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 34.5
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 32.8
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 32.7
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 32.6
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 32.5
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 31.9
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 30.2
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Brain - Putamen (basal ganglia)
Average nTPM: 24.8
Samples: 205

Max nTPM: 37.2
Min nTPM: 16.3
Std nTPM: 3.8
Median nTPM: 24.7
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 37.2
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 36.6
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 35.0
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 34.0
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 33.8
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 33.2
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 33.0
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 32.2
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 31.9
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 31.4
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 31.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 72.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 70.5
FF:10164-103B2 76 years, female 70.5
Globus pallidus
Scaled Tags Per Million: 72.9
FF:10161-103A8 76 years, female 85.8
FF:10175-103C4 60 years, female 59.9
Nucleus accumbens
Scaled Tags Per Million: 56.7
FF:10037-101F1 23-56 years, mixed 56.7
Putamen
Scaled Tags Per Million: 55.4
FF:10176-103C5 60 years, female 55.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 43.0
Pig sample Sample description nTPM
Caudate
nTPM: 37.7
Samples: 4

Max nTPM: 39.9
Min nTPM: 32.9
Sample A Female 32.9
Sample B Female 39.9
Sample C Male 39.8
Sample D Male 38.1
Putamen
nTPM: 43.0
Samples: 4

Max nTPM: 52.2
Min nTPM: 37.4
Sample A Female 38.4
Sample B Female 37.4
Sample C Male 52.2
Sample D Male 43.9
Septum
nTPM: 36.2
Samples: 4

Max nTPM: 39.5
Min nTPM: 31.6
Sample A Female 38.2
Sample B Female 35.5
Sample C Male 39.5
Sample D Male 31.6
Ventral pallidum
nTPM: 37.3
Samples: 4

Max nTPM: 38.8
Min nTPM: 36.1
Sample A Female 37.4
Sample B Female 36.8
Sample C Male 36.1
Sample D Male 38.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 74.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 68.9
Samples: 4

Max nTPM: 70.6
Min nTPM: 66.2
Sample A Male 69.9
Sample B Male 66.2
Sample C Female 68.9
Sample D Female 70.6
Septum
nTPM: 74.1
Samples: 4

Max nTPM: 77.1
Min nTPM: 71.6
Sample A Male 71.6
Sample B Male 77.1
Sample C Female 73.2
Sample D Female 74.3
Ventral forebrain
nTPM: 67.5
Samples: 4

Max nTPM: 72.0
Min nTPM: 61.7
Sample A Male 67.6
Sample B Male 68.8
Sample C Female 61.7
Sample D Female 72.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
71723967 Antisense, RP_050921_01_C04, Mouse strain C57BL/6J (56 days, male) 0.1
74581365 Antisense, RP_050921_01_C04, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
74581365 Antisense, RP_050921_01_C04, Mouse strain C57BL/6J (56 days, male) 0.0
71723967 Antisense, RP_050921_01_C04, Mouse strain C57BL/6J (56 days, male) 0.0

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.