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RBP7
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:27.0 nTPM
HPA:27.0 nTPM
GTEx:19.0 nTPM
FANTOM5:56.4 Scaled Tags Per Million
Pig:0.8 nTPM
Mouse:0.4 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA034749
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 27.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 18.8
2846 Female, age 79, unknown 20.2
1781 Male, age 74, unknown 19.3
2288 Male, age 75, left hemisphere 19.2
1854 Male, age 80, left hemisphere 19.0
2289 Male, age 61, right hemisphere 18.4
2290 Female, age 72, unknown 18.2
1857 Female, age 85, left hemisphere 18.1
2481 Female, age 94, left hemisphere 18.1
Claustrum
nTPM: 21.3
1956 Male, age 74, unknown 26.4
2292 Female, age 85, both hemispheres 24.8
2196 Female, age 79, unknown 21.7
2198 Male, age 80, both hemispheres 20.7
2491 Male, age 75, both hemispheres 20.7
2392 Female, age 94, both hemispheres 20.3
2568 Male, age 61, both hemispheres 19.5
2284 Female, age 91, both hemispheres 19.4
2645 Female, age 72, unknown 18.5
Globus pallidus, externus
nTPM: 24.9
1996 Male, age 80, right hemisphere 26.9
2772 Female, age 79, unknown 26.7
2395 Male, age 75, both hemispheres 25.3
2567 Female, age 72, unknown 23.0
2646 Male, age 61, right hemisphere 22.7
Globus pallidus, internus
nTPM: 27.0
2778 Female, age 91, both hemispheres 30.3
2287 Male, age 75, right hemisphere 30.2
2111 Female, age 85, right hemisphere 29.5
1818 Male, age 74, unknown 28.2
2566 Female, age 72, unknown 24.7
2483 Female, age 94, right hemisphere 23.3
2037 Male, age 80, right hemisphere 22.8
Nucleus accumbens
nTPM: 20.1
2732 Male, age 80, right hemisphere 22.0
2391 Female, age 94, left hemisphere 21.5
2698 Female, age 72, unknown 21.2
2286 Male, age 75, left hemisphere 20.8
1806 Female, age 85, left hemisphere 20.2
1783 Male, age 74, unknown 18.7
2824 Male, age 61, right hemisphere 18.5
1856 Female, age 91, right hemisphere 18.2
Nucleus basalis of Meynert
nTPM: 20.8
2821 Male, age 75, both hemispheres 22.2
2569 Male, age 61, both hemispheres 20.7
2393 Male, age 80, right hemisphere 20.2
2484 Female, age 94, left hemisphere 20.0
Nucleus of the diagonal band
nTPM: 18.0
1812 Female, age 91, both hemispheres 18.4
2029 Male, age 61, right hemisphere 18.0
1979 Male, age 74, unknown 17.9
2775 Male, age 80, right hemisphere 17.9
2195 Female, age 85, both hemispheres 17.7
Olfactory tubercle
nTPM: 18.2
2487 Female, age 94, left hemisphere 18.5
2856 Male, age 75, right hemisphere 18.5
1846 Male, age 80, right hemisphere 17.9
1998 Female, age 91, both hemispheres 17.9
Putamen
nTPM: 19.6
1829 Male, age 74, unknown 21.3
2647 Male, age 75, left hemisphere 20.3
1937 Female, age 91, right hemisphere 19.8
2489 Female, age 72, unknown 19.8
2482 Female, age 94, left hemisphere 19.5
2466 Female, age 79, unknown 18.9
1838 Male, age 80, right hemisphere 17.7
Septal nuclei
nTPM: 18.5
2394 Male, age 61, left hemisphere 20.2
2199 Male, age 80, right hemisphere 19.6
2629 Female, age 94, right hemisphere 18.7
2031 Female, age 72, unknown 18.0
2059 Female, age 85, both hemispheres 18.0
2009 Female, age 91, both hemispheres 17.7
1960 Male, age 74, unknown 17.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 19.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 9.6
Samples: 246

Max nTPM: 64.2
Min nTPM: 1.5
Std nTPM: 7.6
Median nTPM: 7.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 64.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 52.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 34.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 32.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 31.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 28.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 27.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 26.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 26.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 24.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 24.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 7.4
Samples: 246

Max nTPM: 51.4
Min nTPM: 0.8
Std nTPM: 7.7
Median nTPM: 4.7
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 51.4
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 50.9
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 39.8
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 35.3
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 32.9
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 32.3
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 31.1
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 30.1
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 29.5
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 29.3
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 25.6
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Brain - Putamen (basal ganglia)
Average nTPM: 19.0
Samples: 205

Max nTPM: 80.4
Min nTPM: 2.0
Std nTPM: 11.9
Median nTPM: 15.8
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 80.4
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 66.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 60.6
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 55.3
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 50.7
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 48.9
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 47.1
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 46.7
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 44.4
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 44.3
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 42.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 56.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 3.8
FF:10164-103B2 76 years, female 3.8
Globus pallidus
Scaled Tags Per Million: 56.4
FF:10175-103C4 60 years, female 85.2
FF:10161-103A8 76 years, female 27.6
Nucleus accumbens
Scaled Tags Per Million: 10.4
FF:10037-101F1 23-56 years, mixed 10.4
Putamen
Scaled Tags Per Million: 5.0
FF:10176-103C5 60 years, female 5.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 0.8
Pig sample Sample description nTPM
Caudate
nTPM: 0.7
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.5
Sample A Female 0.5
Sample B Female 0.8
Sample C Male 0.5
Sample D Male 0.8
Putamen
nTPM: 0.7
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.3
Sample A Female 0.9
Sample B Female 0.7
Sample C Male 0.3
Sample D Male 0.8
Septum
nTPM: 0.8
Samples: 4

Max nTPM: 1.0
Min nTPM: 0.4
Sample A Female 0.9
Sample B Female 0.8
Sample C Male 0.4
Sample D Male 1.0
Ventral pallidum
nTPM: 0.8
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.7
Sample A Female 0.8
Sample B Female 0.8
Sample C Male 0.8
Sample D Male 0.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.2
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.0
Sample A Male 0.3
Sample B Male 0.0
Sample C Female 0.6
Sample D Female 0.0
Septum
nTPM: 0.4
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.1
Sample A Male 0.1
Sample B Male 0.3
Sample C Female 0.6
Sample D Female 0.5
Ventral forebrain
nTPM: 0.1
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Male 0.1
Sample B Male 0.1
Sample C Female 0.0
Sample D Female 0.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
68545057 Antisense, RP_050118_02_H01, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
68545057 Antisense, RP_050118_02_H01, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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