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FCMR
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:0.3 nTPM
HPA:0.3 nTPM
GTEx:0.2 nTPM
FANTOM5:0.8 Scaled Tags Per Million
Pig:0.6 nTPM
Mouse:0.0 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA003910
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 0.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.0
2846 Female, age 79, unknown 0.2
2288 Male, age 75, left hemisphere 0.1
2290 Female, age 72, unknown 0.1
1781 Male, age 74, unknown 0.0
1854 Male, age 80, left hemisphere 0.0
1857 Female, age 85, left hemisphere 0.0
2289 Male, age 61, right hemisphere 0.0
2481 Female, age 94, left hemisphere 0.0
Claustrum
nTPM: 0.3
2196 Female, age 79, unknown 0.6
2284 Female, age 91, both hemispheres 0.4
2392 Female, age 94, both hemispheres 0.4
2491 Male, age 75, both hemispheres 0.4
2198 Male, age 80, both hemispheres 0.2
2568 Male, age 61, both hemispheres 0.2
2292 Female, age 85, both hemispheres 0.1
2645 Female, age 72, unknown 0.1
1956 Male, age 74, unknown 0.0
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
2483 Female, age 94, right hemisphere 0.2
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 0.1
1806 Female, age 85, left hemisphere 0.3
1856 Female, age 91, right hemisphere 0.3
1783 Male, age 74, unknown 0.2
2698 Female, age 72, unknown 0.1
2286 Male, age 75, left hemisphere 0.0
2391 Female, age 94, left hemisphere 0.0
2732 Male, age 80, right hemisphere 0.0
2824 Male, age 61, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.2
2821 Male, age 75, both hemispheres 0.5
2393 Male, age 80, right hemisphere 0.2
2484 Female, age 94, left hemisphere 0.0
2569 Male, age 61, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 0.1
1979 Male, age 74, unknown 0.5
1812 Female, age 91, both hemispheres 0.2
2029 Male, age 61, right hemisphere 0.0
2195 Female, age 85, both hemispheres 0.0
2775 Male, age 80, right hemisphere 0.0
Olfactory tubercle
nTPM: 0.0
2487 Female, age 94, left hemisphere 0.2
1846 Male, age 80, right hemisphere 0.0
1998 Female, age 91, both hemispheres 0.0
2856 Male, age 75, right hemisphere 0.0
Putamen
nTPM: 0.2
2466 Female, age 79, unknown 0.5
1937 Female, age 91, right hemisphere 0.2
2482 Female, age 94, left hemisphere 0.2
1829 Male, age 74, unknown 0.1
1838 Male, age 80, right hemisphere 0.1
2647 Male, age 75, left hemisphere 0.1
2489 Female, age 72, unknown 0.0
Septal nuclei
nTPM: 0.0
2629 Female, age 94, right hemisphere 0.3
2009 Female, age 91, both hemispheres 0.1
2059 Female, age 85, both hemispheres 0.1
2394 Male, age 61, left hemisphere 0.1
1960 Male, age 74, unknown 0.0
2031 Female, age 72, unknown 0.0
2199 Male, age 80, right hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 0.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 0.2
Samples: 246

Max nTPM: 1.5
Min nTPM: 0.0
Std nTPM: 0.2
Median nTPM: 0.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 1.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 1.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 0.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 0.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 0.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 0.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 0.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 0.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 0.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 0.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 0.1
Samples: 246

Max nTPM: 0.9
Min nTPM: 0.0
Std nTPM: 0.1
Median nTPM: 0.1
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 0.9
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 0.9
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 0.8
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 0.8
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 0.6
GTEX-S7SE-0011-R6A-SM-2XCD9 50-59 years, male 0.6
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 0.5
GTEX-QVUS-0011-R6A-SM-3GACX 60-69 years, female 0.5
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 0.5
GTEX-1EMGI-0011-R6a-SM-9OSVR 60-69 years, male 0.5
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 0.5
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Brain - Putamen (basal ganglia)
Average nTPM: 0.2
Samples: 205

Max nTPM: 2.5
Min nTPM: 0.0
Std nTPM: 0.2
Median nTPM: 0.1
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 2.5
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 1.2
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 0.9
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 0.9
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 0.8
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 0.8
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 0.7
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 0.7
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 0.7
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 0.6
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 0.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 0.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.0
FF:10164-103B2 76 years, female 0.0
Globus pallidus
Scaled Tags Per Million: 0.3
FF:10161-103A8 76 years, female 0.7
FF:10175-103C4 60 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 0.8
FF:10037-101F1 23-56 years, mixed 0.8
Putamen
Scaled Tags Per Million: 0.2
FF:10176-103C5 60 years, female 0.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 0.6
Pig sample Sample description nTPM
Caudate
nTPM: 0.5
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.2
Sample A Female 0.5
Sample B Female 0.8
Sample C Male 0.2
Sample D Male 0.3
Putamen
nTPM: 0.4
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.4
Sample A Female 0.4
Sample B Female 0.4
Sample C Male 0.4
Sample D Male 0.4
Septum
nTPM: 0.6
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.3
Sample A Female 0.3
Sample B Female 0.6
Sample C Male 0.9
Sample D Male 0.7
Ventral pallidum
nTPM: 0.5
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.4
Sample A Female 0.5
Sample B Female 0.4
Sample C Male 0.5
Sample D Male 0.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Male 0.1
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0
Septum
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0
Ventral forebrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
69407134 Antisense, RP_050412_02_H12, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
69407134 Antisense, RP_050412_02_H12, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.