ABOUTMENU
HELP
NEWS
VPS72
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.9 nTPM
HPA:32.9 nTPM
GTEx:31.9 nTPM
FANTOM5:49.2 Scaled Tags Per Million
Pig:60.7 nTPM
Mouse:24.5 nTPM
Allen mouse:1.1 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 32.9
Sample id Sample description nTPM
Hippocampus
nTPM: 31.7
2529 Female, age 94, left hemisphere 33.5
2621 Female, age 67, right hemisphere 32.9
2148 Female, age 91, left hemisphere 31.4
1911 Female, age 85, right hemisphere 30.8
1898 Male, age 80, left hemisphere 30.7
1855 Male, age 76, left hemisphere 30.6
Dentate gyrus
nTPM: 31.7
2530 Female, age 94, left hemisphere 32.9
2246 Female, age 85, both hemispheres 32.7
2528 Male, age 74, both hemispheres 32.0
2531 Female, age 67, both hemispheres 31.3
1927 Female, age 91, both hemispheres 30.9
2010 Male, age 76, both hemispheres 30.6
Entorhinal gyrus
nTPM: 32.2
1787 Male, age 76, left hemisphere 33.2
2764 Male, age 80, right hemisphere 32.9
1938 Female, age 85, left hemisphere 32.6
2117 Female, age 91, right hemisphere 32.4
2686 Male, age 75, right hemisphere 31.2
2613 Female, age 94, left hemisphere 31.1
Hippocampus, CA1
nTPM: 30.7
2527 Male, age 74, both hemispheres 31.8
2749 Male, age 80, left hemisphere 31.1
1873 Female, age 85, both hemispheres 30.9
2045 Male, age 76, both hemispheres 30.1
2082 Female, age 91, right hemisphere 29.5
Hippocampus, CA2
nTPM: 31.5
1892 Male, age 76, both hemispheres 32.8
2437 Female, age 94, left hemisphere 31.8
2113 Female, age 91, right hemisphere 31.6
1940 Female, age 85, left hemisphere 31.4
2249 Male, age 74, both hemispheres 31.4
1963 Male, age 80, left hemisphere 30.1
Hippocampus, CA3
nTPM: 31.9
2620 Female, age 94, left hemisphere 33.7
2137 Male, age 80, left hemisphere 31.8
1891 Female, age 85, both hemispheres 31.7
1867 Male, age 76, both hemispheres 31.6
2436 Male, age 74, both hemispheres 31.6
2861 Female, age 67, both hemispheres 31.0
Parahippocampal cortex
nTPM: 32.5
2532 Female, age 72, left hemisphere 34.0
2692 Male, age 74, both hemispheres 33.4
2250 Female, age 67, right hemisphere 33.3
2245 Female, age 91, both hemispheres 33.1
1850 Male, age 80, both hemispheres 32.6
1990 Female, age 91, right hemisphere 32.2
1933 Female, age 85, both hemispheres 32.1
2622 Female, age 67, right hemisphere 31.5
2018 Male, age 76, both hemispheres 31.2
2693 Female, age 94, both hemispheres 31.2
Perirhinal gyrus
nTPM: 32.9
2848 Male, age 76, right hemisphere 34.3
1841 Female, age 85, right hemisphere 33.3
1794 Male, age 80, right hemisphere 33.0
2521 Female, age 94, right hemisphere 32.4
1847 Female, age 91, left hemisphere 31.4
Subiculum
nTPM: 32.4
2438 Female, age 94, left hemisphere 34.6
2619 Male, age 74, both hemispheres 33.2
1977 Female, age 85, both hemispheres 32.5
2729 Female, age 91, right hemisphere 31.7
2042 Male, age 76, both hemispheres 31.5
1901 Male, age 80, both hemispheres 31.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 31.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 31.9
Samples: 197

Max nTPM: 55.1
Min nTPM: 18.8
Std nTPM: 5.2
Median nTPM: 31.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 55.1
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 49.4
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 47.3
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 45.6
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 44.6
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 43.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 42.5
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 41.1
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 40.6
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 40.4
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 40.3
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 49.2
FF:10153-102I9 76 years, female 52.4
FF:10169-103B7 60 years, female 46.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 60.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 60.8
Samples: 4

Max nTPM: 76.9
Min nTPM: 48.3
Sample A Female 76.9
Sample B Female 57.5
Sample C Male 60.3
Sample D Male 48.3
Entorhinal cortex
nTPM: 55.5
Samples: 4

Max nTPM: 64.8
Min nTPM: 49.6
Sample A Female 64.8
Sample B Female 55.3
Sample C Male 49.6
Sample D Male 52.3
Subiculum
nTPM: 56.7
Samples: 4

Max nTPM: 78.6
Min nTPM: 45.5
Sample A Female 78.6
Sample B Female 50.7
Sample C Male 52.0
Sample D Male 45.5
Ventral hippocampus
nTPM: 59.5
Samples: 4

Max nTPM: 70.3
Min nTPM: 41.4
Sample A Female 59.7
Sample B Female 41.4
Sample C Male 70.3
Sample D Male 66.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 24.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 24.5
Samples: 4

Max nTPM: 27.4
Min nTPM: 20.7
Sample A Male 26.2
Sample B Male 27.4
Sample C Female 23.5
Sample D Female 20.7
Hippocampal formation
nTPM: 23.3
Samples: 4

Max nTPM: 25.1
Min nTPM: 20.8
Sample A Male 20.8
Sample B Male 24.9
Sample C Female 22.4
Sample D Female 25.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.1
80341089 Antisense, RP_071018_01_C05, Mouse strain C57BL/6J (56 days, male) 1.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.