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S100A11
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:108.6 nTPM
HPA:108.6 nTPM
GTEx:119.5 nTPM
FANTOM5:230.7 Scaled Tags Per Million
Pig:31.6 nTPM
Mouse:43.7 nTPM
Allen mouse:1.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 108.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 91.5
2666 Male, age 74, left hemisphere 96.3
1830 Male, age 51, unknown 94.9
2828 Female, age 72, unknown 94.8
1870 Female, age 42, unknown 93.6
2019 Male, age 18, unknown 93.1
1833 Male, age 53, unknown 92.0
2411 Female, age 72, unknown 89.3
2219 Male, age 76, both hemispheres 88.7
1827 Male, age 72, unknown 87.9
2586 Male, age 75, left hemisphere 84.6
Dorsal raphe nucleus
nTPM: 96.3
2750 Male, age 76, both hemispheres 98.1
2298 Female, age 72, unknown 98.0
2016 Female, age 72, unknown 96.7
1828 Male, age 53, unknown 95.5
2047 Male, age 72, unknown 93.1
Inferior colliculus
nTPM: 92.0
1890 Male, age 53, unknown 93.3
2097 Female, age 72, unknown 92.4
2849 Male, age 72, unknown 91.9
1848 Female, age 42, unknown 90.3
Median raphe nucleus
nTPM: 97.1
2220 Male, age 76, midline 97.1
Pedunculopontine tegmental nucleus
nTPM: 108.6
2338 Male, age 61, both hemispheres 139.6
2334 Male, age 80, both hemispheres 99.1
1921 Female, age 85, both hemispheres 87.1
Periaquaductal grey, anterior
nTPM: 91.7
1795 Male, age 51, unknown 93.0
2502 Female, age 75, unknown 92.8
1947 Male, age 18, unknown 89.2
Periaquaductal grey, dorsal
nTPM: 95.1
2850 Male, age 76, both hemispheres 100.5
1831 Male, age 72, unknown 98.2
2464 Female, age 72, unknown 90.8
1840 Male, age 53, unknown 90.7
Periaquaductal grey, lateral
nTPM: 96.8
2272 Male, age 74, both hemispheres 101.2
2053 Male, age 18, unknown 95.8
2140 Male, age 76, both hemispheres 93.3
Pretectal area
nTPM: 92.5
2273 Male, age 74, both hemispheres 96.4
2316 Male, age 76, right hemisphere 96.0
1817 Female, age 42, unknown 95.4
2224 Female, age 72, unknown 95.4
2407 Male, age 75, both hemispheres 93.2
1815 Male, age 53, unknown 93.1
1944 Female, age 72, unknown 91.6
2007 Male, age 72, unknown 91.0
2825 Male, age 18, unknown 88.8
2667 Female, age 75, unknown 88.5
1816 Male, age 51, unknown 87.5
Red nucleus
nTPM: 94.7
2823 Male, age 76, right hemisphere 99.3
2503 Female, age 72, unknown 97.8
1865 Male, age 51, unknown 97.5
2227 Male, age 72, unknown 96.3
2725 Female, age 75, unknown 96.1
1904 Male, age 53, unknown 95.3
2769 Male, age 72, unknown 94.8
1954 Female, age 42, unknown 94.7
2785 Male, age 18, unknown 94.0
1821 Female, age 72, unknown 92.3
2584 Male, age 75, left hemisphere 90.6
2588 Male, age 74, left hemisphere 87.1
Substantia nigra
nTPM: 96.6
2699 Male, age 18, unknown 107.9
2590 Female, age 75, unknown 103.3
2665 Male, age 74, both hemispheres 102.4
1941 Male, age 53, unknown 96.9
1851 Male, age 51, unknown 96.1
1916 Female, age 42, unknown 93.4
2583 Male, age 75, right hemisphere 92.8
2241 Male, age 72, unknown 92.5
2409 Female, age 72, unknown 90.7
1889 Female, age 72, unknown 89.9
Superior colliculus
nTPM: 92.9
2587 Male, age 74, left hemisphere 103.0
1913 Female, age 42, unknown 101.5
1995 Male, age 72, unknown 98.6
2087 Female, age 72, unknown 92.2
1839 Male, age 51, unknown 90.0
2261 Male, age 18, unknown 89.8
1895 Male, age 76, right hemisphere 89.7
1796 Male, age 53, unknown 89.2
2668 Female, age 75, unknown 88.8
2664 Male, age 75, both hemispheres 86.0
Ventral tegmental area
nTPM: 96.3
2021 Male, age 53, unknown 99.3
2218 Male, age 76, both hemispheres 98.4
1915 Female, age 42, unknown 96.8
1942 Male, age 51, unknown 95.8
2223 Female, age 72, unknown 95.5
2410 Female, age 72, unknown 91.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 119.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 119.5
Samples: 139

Max nTPM: 420.9
Min nTPM: 21.0
Std nTPM: 77.4
Median nTPM: 100.1
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 420.9
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 395.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 365.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 360.7
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 304.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 289.4
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 281.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 258.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 257.3
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 253.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 252.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 230.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 230.7
FF:10158-103A5 76 years, female 230.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 31.6
Pig sample Sample description nTPM
Midbrain
nTPM: 19.9
Samples: 4

Max nTPM: 37.2
Min nTPM: 8.5
Sample A Female 37.2
Sample B Female 20.2
Sample C Male 13.5
Sample D Male 8.5
Periaqueductal gray
nTPM: 27.1
Samples: 3

Max nTPM: 38.4
Min nTPM: 21.2
Sample B Female 21.2
Sample C Male 38.4
Sample D Male 21.8
Substantia nigra
nTPM: 27.2
Samples: 4

Max nTPM: 41.9
Min nTPM: 19.6
Sample A Female 25.9
Sample B Female 41.9
Sample C Male 21.3
Sample D Male 19.6
Superior colliculi
nTPM: 31.6
Samples: 4

Max nTPM: 61.2
Min nTPM: 13.2
Sample A Female 31.9
Sample B Female 61.2
Sample C Male 20.1
Sample D Male 13.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 43.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 43.7
Samples: 4

Max nTPM: 49.5
Min nTPM: 40.3
Sample A Male 49.5
Sample B Male 41.0
Sample C Female 40.3
Sample D Female 43.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.9
104600 Antisense, RP_040428_01_F10, Mouse strain C57BL/6J (56 days, male) 1.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.