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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.6 nTPM
HPA:7.6 nTPM
GTEx:9.0 nTPM
FANTOM5:5.8 Scaled Tags Per Million
Pig:5.0 nTPM
Mouse:12.3 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 7.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 6.6
2019 Male, age 18, unknown 8.5
1830 Male, age 51, unknown 7.4
2666 Male, age 74, left hemisphere 7.2
1833 Male, age 53, unknown 6.8
2828 Female, age 72, unknown 6.6
1827 Male, age 72, unknown 6.4
1870 Female, age 42, unknown 6.3
2411 Female, age 72, unknown 6.1
2219 Male, age 76, both hemispheres 5.6
2586 Male, age 75, left hemisphere 5.6
Dorsal raphe nucleus
nTPM: 7.0
2016 Female, age 72, unknown 7.4
1828 Male, age 53, unknown 7.2
2750 Male, age 76, both hemispheres 6.9
2298 Female, age 72, unknown 6.8
2047 Male, age 72, unknown 6.5
Inferior colliculus
nTPM: 7.0
2097 Female, age 72, unknown 7.6
1890 Male, age 53, unknown 7.4
1848 Female, age 42, unknown 6.9
2849 Male, age 72, unknown 6.0
Median raphe nucleus
nTPM: 5.9
2220 Male, age 76, midline 5.9
Pedunculopontine tegmental nucleus
nTPM: 7.0
2338 Male, age 61, both hemispheres 8.2
2334 Male, age 80, both hemispheres 6.8
1921 Female, age 85, both hemispheres 6.0
Periaquaductal grey, anterior
nTPM: 6.7
2502 Female, age 75, unknown 7.3
1795 Male, age 51, unknown 6.6
1947 Male, age 18, unknown 6.3
Periaquaductal grey, dorsal
nTPM: 6.6
2850 Male, age 76, both hemispheres 6.9
1840 Male, age 53, unknown 6.8
1831 Male, age 72, unknown 6.4
2464 Female, age 72, unknown 6.4
Periaquaductal grey, lateral
nTPM: 7.3
2272 Male, age 74, both hemispheres 7.7
2140 Male, age 76, both hemispheres 7.2
2053 Male, age 18, unknown 6.9
Pretectal area
nTPM: 6.8
2316 Male, age 76, right hemisphere 7.9
2273 Male, age 74, both hemispheres 7.8
1944 Female, age 72, unknown 7.1
2007 Male, age 72, unknown 7.0
1817 Female, age 42, unknown 6.9
2667 Female, age 75, unknown 6.7
1815 Male, age 53, unknown 6.6
1816 Male, age 51, unknown 6.4
2224 Female, age 72, unknown 6.3
2407 Male, age 75, both hemispheres 5.9
2825 Male, age 18, unknown 5.8
Red nucleus
nTPM: 7.6
2785 Male, age 18, unknown 8.6
2823 Male, age 76, right hemisphere 8.4
1865 Male, age 51, unknown 7.9
1821 Female, age 72, unknown 7.7
1954 Female, age 42, unknown 7.5
2227 Male, age 72, unknown 7.5
2588 Male, age 74, left hemisphere 7.5
2769 Male, age 72, unknown 7.5
1904 Male, age 53, unknown 7.4
2503 Female, age 72, unknown 7.3
2725 Female, age 75, unknown 7.2
2584 Male, age 75, left hemisphere 6.7
Substantia nigra
nTPM: 6.9
2241 Male, age 72, unknown 8.4
2409 Female, age 72, unknown 7.4
2665 Male, age 74, both hemispheres 7.3
1916 Female, age 42, unknown 7.0
1851 Male, age 51, unknown 6.9
2590 Female, age 75, unknown 6.9
1889 Female, age 72, unknown 6.8
1941 Male, age 53, unknown 6.4
2699 Male, age 18, unknown 6.3
2583 Male, age 75, right hemisphere 5.9
Superior colliculus
nTPM: 6.6
2087 Female, age 72, unknown 7.8
2587 Male, age 74, left hemisphere 7.6
1995 Male, age 72, unknown 7.1
1895 Male, age 76, right hemisphere 6.9
2261 Male, age 18, unknown 6.5
1913 Female, age 42, unknown 6.4
2668 Female, age 75, unknown 6.4
1839 Male, age 51, unknown 6.3
1796 Male, age 53, unknown 5.7
2664 Male, age 75, both hemispheres 5.7
Ventral tegmental area
nTPM: 6.8
2021 Male, age 53, unknown 7.5
2223 Female, age 72, unknown 7.4
2218 Male, age 76, both hemispheres 7.2
1942 Male, age 51, unknown 6.5
2410 Female, age 72, unknown 6.3
1915 Female, age 42, unknown 6.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.0
Samples: 139

Max nTPM: 23.9
Min nTPM: 3.6
Std nTPM: 3.4
Median nTPM: 8.2
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 23.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 22.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 20.8
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 19.4
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 19.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 18.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 15.0
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 14.9
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 14.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 14.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 14.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 5.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 5.8
FF:10158-103A5 76 years, female 5.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 5.0
Pig sample Sample description nTPM
Midbrain
nTPM: 4.4
Samples: 4

Max nTPM: 5.1
Min nTPM: 4.0
Sample A Female 4.2
Sample B Female 5.1
Sample C Male 4.3
Sample D Male 4.0
Periaqueductal gray
nTPM: 4.0
Samples: 3

Max nTPM: 4.5
Min nTPM: 3.5
Sample B Female 4.0
Sample C Male 4.5
Sample D Male 3.5
Substantia nigra
nTPM: 4.0
Samples: 4

Max nTPM: 4.8
Min nTPM: 3.2
Sample A Female 4.3
Sample B Female 4.8
Sample C Male 3.7
Sample D Male 3.2
Superior colliculi
nTPM: 5.0
Samples: 4

Max nTPM: 6.7
Min nTPM: 4.0
Sample A Female 5.2
Sample B Female 6.7
Sample C Male 4.0
Sample D Male 4.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 12.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.3
Samples: 4

Max nTPM: 13.2
Min nTPM: 11.3
Sample A Male 11.7
Sample B Male 11.3
Sample C Female 12.9
Sample D Female 13.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
69013098 Antisense, RP_050309_02_A04, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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