ABOUTMENU
HELP
NEWS
SERPINI1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:153.6 nTPM
HPA:153.6 nTPM
GTEx:142.8 nTPM
FANTOM5:186.1 Scaled Tags Per Million
Pig:26.7 nTPM
Mouse:113.8 nTPM
Allen mouse:8.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 153.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 109.1
2411 Female, age 72, unknown 126.6
1870 Female, age 42, unknown 121.5
1827 Male, age 72, unknown 117.6
2828 Female, age 72, unknown 111.7
2219 Male, age 76, both hemispheres 109.1
1833 Male, age 53, unknown 107.7
1830 Male, age 51, unknown 106.3
2666 Male, age 74, left hemisphere 104.3
2019 Male, age 18, unknown 95.9
2586 Male, age 75, left hemisphere 90.6
Dorsal raphe nucleus
nTPM: 110.2
2750 Male, age 76, both hemispheres 121.2
2298 Female, age 72, unknown 115.2
2047 Male, age 72, unknown 114.9
1828 Male, age 53, unknown 100.8
2016 Female, age 72, unknown 98.6
Inferior colliculus
nTPM: 101.5
2097 Female, age 72, unknown 109.3
1848 Female, age 42, unknown 100.9
1890 Male, age 53, unknown 99.6
2849 Male, age 72, unknown 96.0
Median raphe nucleus
nTPM: 125.1
2220 Male, age 76, midline 125.1
Pedunculopontine tegmental nucleus
nTPM: 113.4
1921 Female, age 85, both hemispheres 117.8
2334 Male, age 80, both hemispheres 117.6
2338 Male, age 61, both hemispheres 104.9
Periaquaductal grey, anterior
nTPM: 153.6
1947 Male, age 18, unknown 206.4
1795 Male, age 51, unknown 145.4
2502 Female, age 75, unknown 109.0
Periaquaductal grey, dorsal
nTPM: 98.9
1840 Male, age 53, unknown 100.9
2464 Female, age 72, unknown 100.3
2850 Male, age 76, both hemispheres 99.3
1831 Male, age 72, unknown 95.1
Periaquaductal grey, lateral
nTPM: 103.1
2272 Male, age 74, both hemispheres 108.3
2053 Male, age 18, unknown 106.4
2140 Male, age 76, both hemispheres 94.5
Pretectal area
nTPM: 108.8
1815 Male, age 53, unknown 120.8
2825 Male, age 18, unknown 119.5
1816 Male, age 51, unknown 116.1
1817 Female, age 42, unknown 115.7
2273 Male, age 74, both hemispheres 108.9
2224 Female, age 72, unknown 106.9
2007 Male, age 72, unknown 106.7
2667 Female, age 75, unknown 104.8
1944 Female, age 72, unknown 103.0
2316 Male, age 76, right hemisphere 97.9
2407 Male, age 75, both hemispheres 96.2
Red nucleus
nTPM: 104.0
2725 Female, age 75, unknown 119.9
1821 Female, age 72, unknown 112.5
2584 Male, age 75, left hemisphere 111.6
1904 Male, age 53, unknown 105.4
2588 Male, age 74, left hemisphere 103.0
2823 Male, age 76, right hemisphere 102.9
2503 Female, age 72, unknown 101.5
1865 Male, age 51, unknown 100.6
1954 Female, age 42, unknown 100.2
2227 Male, age 72, unknown 99.0
2769 Male, age 72, unknown 98.7
2785 Male, age 18, unknown 92.4
Substantia nigra
nTPM: 114.8
2241 Male, age 72, unknown 138.2
1916 Female, age 42, unknown 127.5
2409 Female, age 72, unknown 126.6
1851 Male, age 51, unknown 126.3
2590 Female, age 75, unknown 120.4
1889 Female, age 72, unknown 116.3
2583 Male, age 75, right hemisphere 107.3
1941 Male, age 53, unknown 97.0
2699 Male, age 18, unknown 94.5
2665 Male, age 74, both hemispheres 94.2
Superior colliculus
nTPM: 109.8
1796 Male, age 53, unknown 131.5
2261 Male, age 18, unknown 124.8
2587 Male, age 74, left hemisphere 122.8
1895 Male, age 76, right hemisphere 113.6
2668 Female, age 75, unknown 111.2
1913 Female, age 42, unknown 105.2
1839 Male, age 51, unknown 102.9
1995 Male, age 72, unknown 100.5
2087 Female, age 72, unknown 97.2
2664 Male, age 75, both hemispheres 88.6
Ventral tegmental area
nTPM: 113.6
2410 Female, age 72, unknown 122.8
2223 Female, age 72, unknown 122.1
2218 Male, age 76, both hemispheres 114.6
1915 Female, age 42, unknown 114.4
2021 Male, age 53, unknown 105.4
1942 Male, age 51, unknown 102.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 142.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 142.8
Samples: 139

Max nTPM: 393.2
Min nTPM: 34.7
Std nTPM: 67.6
Median nTPM: 135.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 393.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 348.1
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 324.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 297.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 293.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 283.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 280.3
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 261.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 246.1
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 241.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 240.7
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 186.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 186.1
FF:10158-103A5 76 years, female 186.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 26.7
Pig sample Sample description nTPM
Midbrain
nTPM: 26.7
Samples: 4

Max nTPM: 55.1
Min nTPM: 6.1
Sample A Female 6.1
Sample B Female 20.8
Sample C Male 24.8
Sample D Male 55.1
Periaqueductal gray
nTPM: 24.5
Samples: 3

Max nTPM: 30.7
Min nTPM: 18.2
Sample B Female 18.2
Sample C Male 30.7
Sample D Male 24.5
Substantia nigra
nTPM: 23.1
Samples: 4

Max nTPM: 33.5
Min nTPM: 10.6
Sample A Female 27.3
Sample B Female 21.0
Sample C Male 33.5
Sample D Male 10.6
Superior colliculi
nTPM: 18.8
Samples: 4

Max nTPM: 30.0
Min nTPM: 11.3
Sample A Female 30.0
Sample B Female 11.3
Sample C Male 14.1
Sample D Male 19.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 113.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 113.8
Samples: 4

Max nTPM: 116.3
Min nTPM: 112.0
Sample A Male 112.0
Sample B Male 116.3
Sample C Female 114.2
Sample D Female 112.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.8
69117449 Antisense, RP_050330_01_B08, Mouse strain C57BL/6J (56 days, male) 12.5
963 Antisense, RP_040324_01_A03, Mouse strain C57BL/6J (56 days, male) 5.1
964 Antisense, RP_040324_01_A03, Mouse strain C57BL/6J (56 days, male) 2.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.