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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.1 nTPM
HPA:4.1 nTPM
GTEx:0.8 nTPM
FANTOM5:25.3 Scaled Tags Per Million
Pig:8.8 nTPM
Mouse:4.9 nTPM
Allen mouse:8.9 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 4.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 4.1
2289 Male, age 61, right hemisphere 6.2
2290 Female, age 72, unknown 5.1
1854 Male, age 80, left hemisphere 4.3
2846 Female, age 79, unknown 4.0
1857 Female, age 85, left hemisphere 3.8
2288 Male, age 75, left hemisphere 3.5
2481 Female, age 94, left hemisphere 3.1
1781 Male, age 74, unknown 2.6
Claustrum
nTPM: 2.5
2645 Female, age 72, unknown 3.9
2196 Female, age 79, unknown 3.3
2292 Female, age 85, both hemispheres 3.2
2568 Male, age 61, both hemispheres 2.7
1956 Male, age 74, unknown 2.5
2284 Female, age 91, both hemispheres 2.3
2491 Male, age 75, both hemispheres 2.0
2198 Male, age 80, both hemispheres 1.5
2392 Female, age 94, both hemispheres 1.2
Globus pallidus, externus
nTPM: 1.4
2646 Male, age 61, right hemisphere 3.2
2567 Female, age 72, unknown 3.1
1996 Male, age 80, right hemisphere 0.7
2395 Male, age 75, both hemispheres 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 1.1
2566 Female, age 72, unknown 3.0
1818 Male, age 74, unknown 1.9
2037 Male, age 80, right hemisphere 1.4
2111 Female, age 85, right hemisphere 1.4
2483 Female, age 94, right hemisphere 0.4
2287 Male, age 75, right hemisphere 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 3.2
2824 Male, age 61, right hemisphere 5.1
2698 Female, age 72, unknown 4.5
1783 Male, age 74, unknown 4.4
1806 Female, age 85, left hemisphere 3.2
1856 Female, age 91, right hemisphere 2.7
2286 Male, age 75, left hemisphere 2.4
2732 Male, age 80, right hemisphere 2.0
2391 Female, age 94, left hemisphere 1.3
Nucleus basalis of Meynert
nTPM: 3.2
2569 Male, age 61, both hemispheres 4.1
2821 Male, age 75, both hemispheres 3.4
2393 Male, age 80, right hemisphere 3.2
2484 Female, age 94, left hemisphere 2.1
Nucleus of the diagonal band
nTPM: 1.9
2195 Female, age 85, both hemispheres 3.5
1979 Male, age 74, unknown 2.9
2775 Male, age 80, right hemisphere 1.6
2029 Male, age 61, right hemisphere 1.3
1812 Female, age 91, both hemispheres 0.1
Olfactory tubercle
nTPM: 2.4
2856 Male, age 75, right hemisphere 3.6
2487 Female, age 94, left hemisphere 3.0
1846 Male, age 80, right hemisphere 1.4
1998 Female, age 91, both hemispheres 1.4
Putamen
nTPM: 3.7
1838 Male, age 80, right hemisphere 5.8
2489 Female, age 72, unknown 5.1
2647 Male, age 75, left hemisphere 3.5
1829 Male, age 74, unknown 3.4
1937 Female, age 91, right hemisphere 3.3
2482 Female, age 94, left hemisphere 2.7
2466 Female, age 79, unknown 2.1
Septal nuclei
nTPM: 1.9
2629 Female, age 94, right hemisphere 4.1
1960 Male, age 74, unknown 2.4
2199 Male, age 80, right hemisphere 2.3
2059 Female, age 85, both hemispheres 2.1
2009 Female, age 91, both hemispheres 1.2
2031 Female, age 72, unknown 1.0
2394 Male, age 61, left hemisphere 0.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 0.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 0.8
Samples: 246

Max nTPM: 3.0
Min nTPM: 0.0
Std nTPM: 0.4
Median nTPM: 0.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 3.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 2.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 2.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 2.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 2.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 2.0
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 2.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 1.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 1.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 1.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 1.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 0.8
Samples: 246

Max nTPM: 3.8
Min nTPM: 0.0
Std nTPM: 0.5
Median nTPM: 0.8
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 3.8
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 3.4
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 2.6
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 2.6
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 2.3
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 2.2
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 2.1
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 2.1
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 2.0
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 2.0
GTEX-RU72-0011-R6A-SM-2TF71 50-59 years, female 1.9
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Brain - Putamen (basal ganglia)
Average nTPM: 0.7
Samples: 205

Max nTPM: 2.8
Min nTPM: 0.0
Std nTPM: 0.4
Median nTPM: 0.7
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 2.8
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 2.1
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 1.8
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 1.8
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 1.8
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 1.7
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 1.7
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 1.5
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 1.5
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 1.5
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 1.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 25.3
FF:10164-103B2 76 years, female 25.3
Globus pallidus
Scaled Tags Per Million: 19.2
FF:10161-103A8 76 years, female 23.4
FF:10175-103C4 60 years, female 14.9
Nucleus accumbens
Scaled Tags Per Million: 17.1
FF:10037-101F1 23-56 years, mixed 17.1
Putamen
Scaled Tags Per Million: 18.1
FF:10176-103C5 60 years, female 18.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 8.8
Pig sample Sample description nTPM
Caudate
nTPM: 8.5
Samples: 4

Max nTPM: 9.2
Min nTPM: 8.0
Sample A Female 8.0
Sample B Female 8.1
Sample C Male 8.5
Sample D Male 9.2
Putamen
nTPM: 8.8
Samples: 4

Max nTPM: 9.3
Min nTPM: 8.1
Sample A Female 8.7
Sample B Female 9.1
Sample C Male 8.1
Sample D Male 9.3
Septum
nTPM: 8.2
Samples: 4

Max nTPM: 8.6
Min nTPM: 7.7
Sample A Female 8.6
Sample B Female 8.4
Sample C Male 7.7
Sample D Male 7.9
Ventral pallidum
nTPM: 8.5
Samples: 4

Max nTPM: 9.1
Min nTPM: 7.8
Sample A Female 8.5
Sample B Female 7.8
Sample C Male 9.1
Sample D Male 8.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 4.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 4.9
Samples: 4

Max nTPM: 5.1
Min nTPM: 4.3
Sample A Male 5.0
Sample B Male 4.3
Sample C Female 5.1
Sample D Female 5.1
Septum
nTPM: 3.6
Samples: 4

Max nTPM: 4.0
Min nTPM: 3.1
Sample A Male 3.7
Sample B Male 3.5
Sample C Female 3.1
Sample D Female 4.0
Ventral forebrain
nTPM: 4.4
Samples: 4

Max nTPM: 4.8
Min nTPM: 3.9
Sample A Male 4.8
Sample B Male 4.5
Sample C Female 3.9
Sample D Female 4.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 8.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 8.9
70301979 Antisense, RP_050607_03_C06, Mouse strain C57BL/6J (56 days, male) 8.9
Pallidum
Expression energy: 7.4
70301979 Antisense, RP_050607_03_C06, Mouse strain C57BL/6J (56 days, male) 7.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.