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GYG1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:39.7 nTPM
HPA:39.7 nTPM
GTEx:52.7 nTPM
FANTOM5:43.4 Scaled Tags Per Million
Pig:46.9 nTPM
Mouse:55.2 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 39.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.1
2586 Male, age 75, left hemisphere 33.3
2411 Female, age 72, unknown 32.5
1870 Female, age 42, unknown 32.0
1827 Male, age 72, unknown 31.8
2828 Female, age 72, unknown 31.5
1830 Male, age 51, unknown 31.0
2219 Male, age 76, both hemispheres 30.9
2019 Male, age 18, unknown 30.7
1833 Male, age 53, unknown 30.5
2666 Male, age 74, left hemisphere 27.1
Dorsal raphe nucleus
nTPM: 37.8
2298 Female, age 72, unknown 40.6
2047 Male, age 72, unknown 39.6
2750 Male, age 76, both hemispheres 37.7
1828 Male, age 53, unknown 36.7
2016 Female, age 72, unknown 34.4
Inferior colliculus
nTPM: 32.2
2097 Female, age 72, unknown 34.0
1848 Female, age 42, unknown 32.1
1890 Male, age 53, unknown 31.7
2849 Male, age 72, unknown 30.8
Median raphe nucleus
nTPM: 39.7
2220 Male, age 76, midline 39.7
Pedunculopontine tegmental nucleus
nTPM: 34.6
2334 Male, age 80, both hemispheres 36.3
1921 Female, age 85, both hemispheres 34.5
2338 Male, age 61, both hemispheres 33.1
Periaquaductal grey, anterior
nTPM: 32.3
1947 Male, age 18, unknown 33.2
2502 Female, age 75, unknown 32.1
1795 Male, age 51, unknown 31.5
Periaquaductal grey, dorsal
nTPM: 32.7
2850 Male, age 76, both hemispheres 35.0
1840 Male, age 53, unknown 34.2
2464 Female, age 72, unknown 31.1
1831 Male, age 72, unknown 30.3
Periaquaductal grey, lateral
nTPM: 32.3
2140 Male, age 76, both hemispheres 33.7
2053 Male, age 18, unknown 32.0
2272 Male, age 74, both hemispheres 31.3
Pretectal area
nTPM: 32.2
2273 Male, age 74, both hemispheres 36.6
2667 Female, age 75, unknown 35.7
2224 Female, age 72, unknown 33.1
1944 Female, age 72, unknown 33.0
2825 Male, age 18, unknown 32.8
2007 Male, age 72, unknown 32.1
1817 Female, age 42, unknown 31.6
1815 Male, age 53, unknown 30.3
1816 Male, age 51, unknown 30.2
2316 Male, age 76, right hemisphere 30.0
2407 Male, age 75, both hemispheres 29.1
Red nucleus
nTPM: 31.6
1821 Female, age 72, unknown 37.9
1954 Female, age 42, unknown 33.1
2823 Male, age 76, right hemisphere 32.6
2584 Male, age 75, left hemisphere 31.7
1904 Male, age 53, unknown 31.4
2227 Male, age 72, unknown 31.4
1865 Male, age 51, unknown 31.3
2725 Female, age 75, unknown 31.1
2769 Male, age 72, unknown 31.1
2503 Female, age 72, unknown 30.2
2785 Male, age 18, unknown 29.5
2588 Male, age 74, left hemisphere 28.3
Substantia nigra
nTPM: 39.4
1916 Female, age 42, unknown 50.0
2241 Male, age 72, unknown 46.1
1851 Male, age 51, unknown 44.4
1941 Male, age 53, unknown 41.2
2699 Male, age 18, unknown 41.0
2409 Female, age 72, unknown 38.0
2590 Female, age 75, unknown 34.2
1889 Female, age 72, unknown 34.0
2665 Male, age 74, both hemispheres 33.0
2583 Male, age 75, right hemisphere 32.5
Superior colliculus
nTPM: 30.5
1796 Male, age 53, unknown 32.5
2087 Female, age 72, unknown 31.9
2587 Male, age 74, left hemisphere 31.2
2664 Male, age 75, both hemispheres 31.2
2668 Female, age 75, unknown 31.2
1839 Male, age 51, unknown 30.6
2261 Male, age 18, unknown 30.2
1895 Male, age 76, right hemisphere 29.7
1995 Male, age 72, unknown 28.3
1913 Female, age 42, unknown 27.9
Ventral tegmental area
nTPM: 37.1
1915 Female, age 42, unknown 41.9
2218 Male, age 76, both hemispheres 39.8
2410 Female, age 72, unknown 38.5
1942 Male, age 51, unknown 35.8
2021 Male, age 53, unknown 34.7
2223 Female, age 72, unknown 31.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 52.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 52.7
Samples: 139

Max nTPM: 252.2
Min nTPM: 18.4
Std nTPM: 26.5
Median nTPM: 45.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 252.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 140.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 120.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 116.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 108.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 107.4
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 103.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 101.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 101.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 80.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 77.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.4
FF:10158-103A5 76 years, female 43.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 46.9
Pig sample Sample description nTPM
Midbrain
nTPM: 45.5
Samples: 4

Max nTPM: 61.3
Min nTPM: 32.6
Sample A Female 47.4
Sample B Female 32.6
Sample C Male 61.3
Sample D Male 40.8
Periaqueductal gray
nTPM: 34.1
Samples: 3

Max nTPM: 43.4
Min nTPM: 28.9
Sample B Female 29.9
Sample C Male 43.4
Sample D Male 28.9
Substantia nigra
nTPM: 42.4
Samples: 4

Max nTPM: 61.5
Min nTPM: 26.0
Sample A Female 61.5
Sample B Female 37.2
Sample C Male 44.9
Sample D Male 26.0
Superior colliculi
nTPM: 46.9
Samples: 4

Max nTPM: 67.0
Min nTPM: 31.6
Sample A Female 49.7
Sample B Female 31.6
Sample C Male 67.0
Sample D Male 39.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 55.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 55.2
Samples: 4

Max nTPM: 57.0
Min nTPM: 50.9
Sample A Male 50.9
Sample B Male 56.2
Sample C Female 57.0
Sample D Female 56.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
73817930 Antisense, RP_051214_01_A01, Mouse strain C57BL/6J (56 days, male) 1.2
74059322 Antisense, RP_051214_01_A01, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.