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SMIM12
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni
Consensus:31.5 nTPM
HPA:31.5 nTPM
GTEx:26.6 nTPM
FANTOM5:26.0 Scaled Tags Per Million
Mouse:65.6 nTPM
Allen mouse:7.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA065331
Glial cells Medium
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 31.5
Sample id Sample description nTPM
Hippocampus
nTPM: 29.2
1898 Male, age 80, left hemisphere 30.9
2621 Female, age 67, right hemisphere 30.4
2148 Female, age 91, left hemisphere 30.2
1855 Male, age 76, left hemisphere 28.5
1911 Female, age 85, right hemisphere 27.7
2529 Female, age 94, left hemisphere 27.6
Dentate gyrus
nTPM: 29.0
1927 Female, age 91, both hemispheres 32.8
2531 Female, age 67, both hemispheres 30.2
2246 Female, age 85, both hemispheres 29.4
2010 Male, age 76, both hemispheres 28.2
2528 Male, age 74, both hemispheres 28.0
2530 Female, age 94, left hemisphere 25.4
Entorhinal gyrus
nTPM: 29.5
2613 Female, age 94, left hemisphere 32.2
2764 Male, age 80, right hemisphere 32.0
2686 Male, age 75, right hemisphere 29.6
1938 Female, age 85, left hemisphere 28.1
1787 Male, age 76, left hemisphere 28.0
2117 Female, age 91, right hemisphere 27.0
Hippocampus, CA1
nTPM: 30.8
2749 Male, age 80, left hemisphere 38.7
2527 Male, age 74, both hemispheres 29.3
1873 Female, age 85, both hemispheres 29.2
2045 Male, age 76, both hemispheres 29.0
2082 Female, age 91, right hemisphere 28.0
Hippocampus, CA2
nTPM: 29.8
1892 Male, age 76, both hemispheres 34.4
1963 Male, age 80, left hemisphere 31.4
2113 Female, age 91, right hemisphere 28.6
1940 Female, age 85, left hemisphere 28.2
2437 Female, age 94, left hemisphere 28.2
2249 Male, age 74, both hemispheres 28.0
Hippocampus, CA3
nTPM: 31.5
2137 Male, age 80, left hemisphere 39.3
2620 Female, age 94, left hemisphere 32.3
2861 Female, age 67, both hemispheres 30.6
1867 Male, age 76, both hemispheres 29.8
2436 Male, age 74, both hemispheres 28.9
1891 Female, age 85, both hemispheres 27.8
Parahippocampal cortex
nTPM: 30.1
2693 Female, age 94, both hemispheres 33.4
2245 Female, age 91, both hemispheres 33.2
1850 Male, age 80, both hemispheres 31.4
2622 Female, age 67, right hemisphere 30.4
1990 Female, age 91, right hemisphere 29.5
2532 Female, age 72, left hemisphere 29.3
2250 Female, age 67, right hemisphere 29.0
2692 Male, age 74, both hemispheres 28.8
2018 Male, age 76, both hemispheres 27.9
1933 Female, age 85, both hemispheres 27.8
Perirhinal gyrus
nTPM: 31.5
2521 Female, age 94, right hemisphere 33.4
1847 Female, age 91, left hemisphere 32.9
1841 Female, age 85, right hemisphere 31.2
1794 Male, age 80, right hemisphere 30.7
2848 Male, age 76, right hemisphere 29.1
Subiculum
nTPM: 28.5
1901 Male, age 80, both hemispheres 32.9
1977 Female, age 85, both hemispheres 28.6
2438 Female, age 94, left hemisphere 27.9
2619 Male, age 74, both hemispheres 27.5
2042 Male, age 76, both hemispheres 27.2
2729 Female, age 91, right hemisphere 26.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 26.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 26.6
Samples: 197

Max nTPM: 58.3
Min nTPM: 12.4
Std nTPM: 7.6
Median nTPM: 24.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 58.3
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 52.6
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 49.1
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 48.4
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 46.1
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 43.4
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 42.7
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 41.3
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 40.8
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 40.6
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 40.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 26.0
FF:10169-103B7 60 years, female 34.5
FF:10153-102I9 76 years, female 17.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 65.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 62.3
Samples: 4

Max nTPM: 66.7
Min nTPM: 59.0
Sample A Male 60.3
Sample B Male 66.7
Sample C Female 63.2
Sample D Female 59.0
Hippocampal formation
nTPM: 65.6
Samples: 4

Max nTPM: 71.8
Min nTPM: 58.5
Sample A Male 67.9
Sample B Male 58.5
Sample C Female 71.8
Sample D Female 64.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 7.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.4
69080042 Antisense, RP_050324_01_F05, Mouse strain C57BL/6J (56 days, male) 7.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.