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RPN1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:56.1 nTPM
HPA:56.1 nTPM
GTEx:50.6 nTPM
FANTOM5:119.8 Scaled Tags Per Million
Pig:68.6 nTPM
Mouse:68.6 nTPM
Allen mouse:13.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA026828Antibody HPA051520Antibody CAB009748
Glial cells Not detectedLowNot detected
Neuronal cells MediumHighMedium







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 56.1
Sample id Sample description nTPM
Hippocampus
nTPM: 53.6
1898 Male, age 80, left hemisphere 59.9
2621 Female, age 67, right hemisphere 54.7
2529 Female, age 94, left hemisphere 53.0
1855 Male, age 76, left hemisphere 52.8
1911 Female, age 85, right hemisphere 52.3
2148 Female, age 91, left hemisphere 48.6
Dentate gyrus
nTPM: 54.0
2530 Female, age 94, left hemisphere 58.3
2010 Male, age 76, both hemispheres 57.2
2528 Male, age 74, both hemispheres 55.6
1927 Female, age 91, both hemispheres 53.8
2246 Female, age 85, both hemispheres 51.9
2531 Female, age 67, both hemispheres 47.4
Entorhinal gyrus
nTPM: 52.0
2117 Female, age 91, right hemisphere 58.8
1938 Female, age 85, left hemisphere 53.5
2764 Male, age 80, right hemisphere 53.4
1787 Male, age 76, left hemisphere 52.5
2613 Female, age 94, left hemisphere 48.9
2686 Male, age 75, right hemisphere 44.8
Hippocampus, CA1
nTPM: 53.8
2749 Male, age 80, left hemisphere 57.0
1873 Female, age 85, both hemispheres 55.0
2527 Male, age 74, both hemispheres 54.3
2045 Male, age 76, both hemispheres 51.6
2082 Female, age 91, right hemisphere 50.9
Hippocampus, CA2
nTPM: 56.1
2249 Male, age 74, both hemispheres 63.4
1963 Male, age 80, left hemisphere 58.7
1892 Male, age 76, both hemispheres 55.4
2437 Female, age 94, left hemisphere 54.2
1940 Female, age 85, left hemisphere 53.9
2113 Female, age 91, right hemisphere 51.1
Hippocampus, CA3
nTPM: 52.5
2436 Male, age 74, both hemispheres 63.3
1867 Male, age 76, both hemispheres 54.3
1891 Female, age 85, both hemispheres 54.0
2620 Female, age 94, left hemisphere 49.6
2137 Male, age 80, left hemisphere 49.1
2861 Female, age 67, both hemispheres 44.9
Parahippocampal cortex
nTPM: 50.6
1850 Male, age 80, both hemispheres 54.1
1990 Female, age 91, right hemisphere 53.5
2250 Female, age 67, right hemisphere 53.4
1933 Female, age 85, both hemispheres 52.7
2018 Male, age 76, both hemispheres 51.7
2532 Female, age 72, left hemisphere 50.4
2245 Female, age 91, both hemispheres 49.9
2693 Female, age 94, both hemispheres 49.5
2692 Male, age 74, both hemispheres 48.7
2622 Female, age 67, right hemisphere 42.3
Perirhinal gyrus
nTPM: 53.5
1847 Female, age 91, left hemisphere 54.8
1841 Female, age 85, right hemisphere 54.6
2521 Female, age 94, right hemisphere 54.6
1794 Male, age 80, right hemisphere 54.4
2848 Male, age 76, right hemisphere 49.2
Subiculum
nTPM: 54.1
2042 Male, age 76, both hemispheres 57.6
1977 Female, age 85, both hemispheres 55.2
1901 Male, age 80, both hemispheres 53.9
2729 Female, age 91, right hemisphere 53.6
2619 Male, age 74, both hemispheres 53.1
2438 Female, age 94, left hemisphere 51.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 50.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 50.6
Samples: 197

Max nTPM: 103.8
Min nTPM: 25.9
Std nTPM: 9.7
Median nTPM: 49.6
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 103.8
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 79.7
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 79.7
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 77.0
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 73.5
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 72.8
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 71.0
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 68.2
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 67.2
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 67.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 66.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 119.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 119.8
FF:10153-102I9 76 years, female 135.0
FF:10169-103B7 60 years, female 104.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 68.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 68.6
Samples: 4

Max nTPM: 83.7
Min nTPM: 58.3
Sample A Female 83.7
Sample B Female 69.9
Sample C Male 62.4
Sample D Male 58.3
Entorhinal cortex
nTPM: 56.2
Samples: 4

Max nTPM: 63.8
Min nTPM: 46.5
Sample A Female 63.8
Sample B Female 58.0
Sample C Male 56.4
Sample D Male 46.5
Subiculum
nTPM: 59.2
Samples: 4

Max nTPM: 72.5
Min nTPM: 54.3
Sample A Female 72.5
Sample B Female 54.3
Sample C Male 54.4
Sample D Male 55.5
Ventral hippocampus
nTPM: 65.6
Samples: 4

Max nTPM: 84.0
Min nTPM: 46.4
Sample A Female 68.0
Sample B Female 46.4
Sample C Male 84.0
Sample D Male 64.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 68.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 68.6
Samples: 4

Max nTPM: 78.1
Min nTPM: 64.1
Sample A Male 64.9
Sample B Male 64.1
Sample C Female 67.4
Sample D Female 78.1
Hippocampal formation
nTPM: 66.3
Samples: 4

Max nTPM: 72.0
Min nTPM: 61.5
Sample A Male 61.5
Sample B Male 64.2
Sample C Female 72.0
Sample D Female 67.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 13.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 13.0
75774675 Antisense, RP_060530_01_C12, Mouse strain C57BL/6J (56 days, male) 14.7
638734 Antisense, RP_040831_02_F02, Mouse strain C57BL/6J (56 days, male) 11.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.