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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni
Consensus:72.3 nTPM
HPA:72.3 nTPM
GTEx:52.1 nTPM
FANTOM5:231.1 Scaled Tags Per Million
Pig:68.0 nTPM
Mouse:19.0 nTPM
Allen mouse:3.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA029480Antibody HPA029481
Glial cells MediumMedium
Neuronal cells LowLow




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 72.3
Sample id Sample description nTPM
Hippocampus
nTPM: 72.3
1898 Male, age 80, left hemisphere 84.1
1855 Male, age 76, left hemisphere 81.9
2621 Female, age 67, right hemisphere 71.2
2529 Female, age 94, left hemisphere 67.8
2148 Female, age 91, left hemisphere 66.3
1911 Female, age 85, right hemisphere 62.7
Dentate gyrus
nTPM: 68.6
2010 Male, age 76, both hemispheres 80.9
1927 Female, age 91, both hemispheres 73.9
2530 Female, age 94, left hemisphere 69.0
2528 Male, age 74, both hemispheres 66.9
2246 Female, age 85, both hemispheres 63.0
2531 Female, age 67, both hemispheres 58.1
Entorhinal gyrus
nTPM: 67.6
1787 Male, age 76, left hemisphere 74.4
2764 Male, age 80, right hemisphere 68.8
2117 Female, age 91, right hemisphere 68.5
1938 Female, age 85, left hemisphere 67.2
2686 Male, age 75, right hemisphere 64.9
2613 Female, age 94, left hemisphere 61.7
Hippocampus, CA1
nTPM: 69.8
2527 Male, age 74, both hemispheres 78.9
2749 Male, age 80, left hemisphere 75.9
2082 Female, age 91, right hemisphere 66.1
1873 Female, age 85, both hemispheres 64.4
2045 Male, age 76, both hemispheres 63.9
Hippocampus, CA2
nTPM: 68.9
2249 Male, age 74, both hemispheres 76.9
1940 Female, age 85, left hemisphere 72.7
1892 Male, age 76, both hemispheres 70.5
1963 Male, age 80, left hemisphere 68.8
2113 Female, age 91, right hemisphere 64.9
2437 Female, age 94, left hemisphere 59.8
Hippocampus, CA3
nTPM: 65.1
2436 Male, age 74, both hemispheres 70.6
2137 Male, age 80, left hemisphere 68.8
1891 Female, age 85, both hemispheres 64.7
1867 Male, age 76, both hemispheres 64.2
2861 Female, age 67, both hemispheres 62.7
2620 Female, age 94, left hemisphere 59.5
Parahippocampal cortex
nTPM: 65.9
1850 Male, age 80, both hemispheres 71.1
1933 Female, age 85, both hemispheres 67.4
2622 Female, age 67, right hemisphere 67.2
2692 Male, age 74, both hemispheres 67.0
2018 Male, age 76, both hemispheres 66.6
2693 Female, age 94, both hemispheres 66.5
2250 Female, age 67, right hemisphere 66.3
1990 Female, age 91, right hemisphere 64.9
2245 Female, age 91, both hemispheres 61.4
2532 Female, age 72, left hemisphere 60.5
Perirhinal gyrus
nTPM: 67.9
1794 Male, age 80, right hemisphere 77.3
1847 Female, age 91, left hemisphere 68.7
2848 Male, age 76, right hemisphere 64.7
1841 Female, age 85, right hemisphere 64.4
2521 Female, age 94, right hemisphere 64.1
Subiculum
nTPM: 69.1
2619 Male, age 74, both hemispheres 72.6
1901 Male, age 80, both hemispheres 71.7
2042 Male, age 76, both hemispheres 71.6
2729 Female, age 91, right hemisphere 68.6
2438 Female, age 94, left hemisphere 66.4
1977 Female, age 85, both hemispheres 63.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 52.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 52.1
Samples: 197

Max nTPM: 196.9
Min nTPM: 18.4
Std nTPM: 19.2
Median nTPM: 49.0
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 196.9
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 151.6
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 106.2
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 97.6
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 97.0
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 88.5
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 88.1
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 80.7
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 80.1
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 79.4
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 78.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 231.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 231.1
FF:10169-103B7 60 years, female 238.5
FF:10153-102I9 76 years, female 223.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 68.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 68.0
Samples: 4

Max nTPM: 86.8
Min nTPM: 45.2
Sample A Female 86.8
Sample B Female 63.1
Sample C Male 77.0
Sample D Male 45.2
Entorhinal cortex
nTPM: 59.1
Samples: 4

Max nTPM: 63.0
Min nTPM: 51.7
Sample A Female 63.0
Sample B Female 63.0
Sample C Male 58.8
Sample D Male 51.7
Subiculum
nTPM: 59.9
Samples: 4

Max nTPM: 73.7
Min nTPM: 50.9
Sample A Female 73.7
Sample B Female 56.2
Sample C Male 58.7
Sample D Male 50.9
Ventral hippocampus
nTPM: 66.0
Samples: 4

Max nTPM: 85.9
Min nTPM: 45.3
Sample A Female 69.6
Sample B Female 45.3
Sample C Male 85.9
Sample D Male 63.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 19.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 19.0
Samples: 4

Max nTPM: 20.9
Min nTPM: 16.1
Sample A Male 18.8
Sample B Male 20.9
Sample C Female 16.1
Sample D Female 20.1
Hippocampal formation
nTPM: 19.0
Samples: 4

Max nTPM: 22.4
Min nTPM: 16.7
Sample A Male 16.7
Sample B Male 19.2
Sample C Female 17.6
Sample D Female 22.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.6
71393286 Antisense, RP_050512_04_E03, Mouse strain C57BL/6J (56 days, male) 3.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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