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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:22.0 nTPM
HPA:22.0 nTPM
GTEx:16.6 nTPM
FANTOM5:62.7 Scaled Tags Per Million
Pig:17.1 nTPM
Mouse:30.3 nTPM
Allen mouse:0.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA040586
Glial cells Low
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 22.0
Sample id Sample description nTPM
Hippocampus
nTPM: 14.9
2529 Female, age 94, left hemisphere 25.0
1911 Female, age 85, right hemisphere 16.4
1855 Male, age 76, left hemisphere 13.7
2148 Female, age 91, left hemisphere 13.6
1898 Male, age 80, left hemisphere 11.4
2621 Female, age 67, right hemisphere 9.4
Dentate gyrus
nTPM: 12.4
2528 Male, age 74, both hemispheres 22.3
2246 Female, age 85, both hemispheres 16.8
2530 Female, age 94, left hemisphere 15.8
2010 Male, age 76, both hemispheres 13.2
2531 Female, age 67, both hemispheres 3.6
1927 Female, age 91, both hemispheres 2.8
Entorhinal gyrus
nTPM: 15.7
2117 Female, age 91, right hemisphere 26.7
2764 Male, age 80, right hemisphere 17.9
2686 Male, age 75, right hemisphere 15.4
2613 Female, age 94, left hemisphere 11.7
1938 Female, age 85, left hemisphere 11.5
1787 Male, age 76, left hemisphere 11.1
Hippocampus, CA1
nTPM: 11.5
2527 Male, age 74, both hemispheres 22.4
2082 Female, age 91, right hemisphere 20.5
1873 Female, age 85, both hemispheres 13.2
2045 Male, age 76, both hemispheres 1.1
2749 Male, age 80, left hemisphere 0.0
Hippocampus, CA2
nTPM: 15.4
1940 Female, age 85, left hemisphere 24.5
2249 Male, age 74, both hemispheres 21.7
2113 Female, age 91, right hemisphere 19.6
2437 Female, age 94, left hemisphere 14.7
1963 Male, age 80, left hemisphere 11.9
1892 Male, age 76, both hemispheres 0.0
Hippocampus, CA3
nTPM: 11.3
2436 Male, age 74, both hemispheres 25.8
1891 Female, age 85, both hemispheres 20.3
2861 Female, age 67, both hemispheres 9.4
1867 Male, age 76, both hemispheres 6.0
2620 Female, age 94, left hemisphere 5.0
2137 Male, age 80, left hemisphere 1.3
Parahippocampal cortex
nTPM: 12.3
2692 Male, age 74, both hemispheres 30.3
2622 Female, age 67, right hemisphere 14.9
1990 Female, age 91, right hemisphere 14.8
1933 Female, age 85, both hemispheres 11.8
2250 Female, age 67, right hemisphere 11.3
2018 Male, age 76, both hemispheres 10.0
2532 Female, age 72, left hemisphere 8.5
2245 Female, age 91, both hemispheres 8.3
2693 Female, age 94, both hemispheres 6.9
1850 Male, age 80, both hemispheres 6.7
Perirhinal gyrus
nTPM: 4.5
2521 Female, age 94, right hemisphere 6.8
1847 Female, age 91, left hemisphere 5.6
1794 Male, age 80, right hemisphere 5.1
1841 Female, age 85, right hemisphere 2.8
2848 Male, age 76, right hemisphere 2.5
Subiculum
nTPM: 22.0
2042 Male, age 76, both hemispheres 33.2
2619 Male, age 74, both hemispheres 30.7
2729 Female, age 91, right hemisphere 21.7
1901 Male, age 80, both hemispheres 18.8
1977 Female, age 85, both hemispheres 15.7
2438 Female, age 94, left hemisphere 12.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 16.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 16.6
Samples: 197

Max nTPM: 44.0
Min nTPM: 2.3
Std nTPM: 8.1
Median nTPM: 14.7
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 44.0
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 40.7
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 40.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 36.5
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 36.1
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 35.2
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 33.3
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 33.1
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 32.3
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 32.2
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 31.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 62.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 62.7
FF:10153-102I9 76 years, female 78.3
FF:10169-103B7 60 years, female 47.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 17.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 15.1
Samples: 4

Max nTPM: 19.3
Min nTPM: 10.2
Sample A Female 17.4
Sample B Female 13.4
Sample C Male 19.3
Sample D Male 10.2
Entorhinal cortex
nTPM: 13.2
Samples: 4

Max nTPM: 13.9
Min nTPM: 12.2
Sample A Female 13.9
Sample B Female 12.8
Sample C Male 13.8
Sample D Male 12.2
Subiculum
nTPM: 16.5
Samples: 4

Max nTPM: 18.5
Min nTPM: 14.3
Sample A Female 18.5
Sample B Female 17.1
Sample C Male 16.1
Sample D Male 14.3
Ventral hippocampus
nTPM: 17.1
Samples: 4

Max nTPM: 22.4
Min nTPM: 13.5
Sample A Female 16.3
Sample B Female 13.5
Sample C Male 22.4
Sample D Male 16.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 30.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 30.4
Samples: 4

Max nTPM: 33.2
Min nTPM: 24.6
Sample A Male 31.4
Sample B Male 24.6
Sample C Female 32.2
Sample D Female 33.2
Hippocampal formation
nTPM: 25.8
Samples: 4

Max nTPM: 29.4
Min nTPM: 24.2
Sample A Male 25.0
Sample B Male 24.7
Sample C Female 24.2
Sample D Female 29.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.0
1562 Antisense, RP_Baylor_103393, Mouse strain C57BL/6J (56 days, male) 0.0
1561 Antisense, RP_Baylor_103393, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.