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HMGB2
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.8 nTPM
HPA:36.8 nTPM
GTEx:60.2 nTPM
FANTOM5:57.6 Scaled Tags Per Million
Pig:3.7 nTPM
Mouse:2.4 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 36.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.3
1870 Female, age 42, unknown 35.3
2019 Male, age 18, unknown 34.5
1830 Male, age 51, unknown 34.1
1827 Male, age 72, unknown 33.7
2411 Female, age 72, unknown 33.5
2828 Female, age 72, unknown 33.2
1833 Male, age 53, unknown 33.1
2666 Male, age 74, left hemisphere 33.1
2219 Male, age 76, both hemispheres 31.4
2586 Male, age 75, left hemisphere 31.2
Dorsal raphe nucleus
nTPM: 33.9
2016 Female, age 72, unknown 34.7
2298 Female, age 72, unknown 34.7
1828 Male, age 53, unknown 33.9
2750 Male, age 76, both hemispheres 33.6
2047 Male, age 72, unknown 32.5
Inferior colliculus
nTPM: 33.7
2849 Male, age 72, unknown 35.2
1848 Female, age 42, unknown 33.7
1890 Male, age 53, unknown 33.6
2097 Female, age 72, unknown 32.5
Median raphe nucleus
nTPM: 35.2
2220 Male, age 76, midline 35.2
Pedunculopontine tegmental nucleus
nTPM: 36.8
2338 Male, age 61, both hemispheres 41.8
2334 Male, age 80, both hemispheres 34.7
1921 Female, age 85, both hemispheres 33.9
Periaquaductal grey, anterior
nTPM: 32.3
2502 Female, age 75, unknown 32.8
1795 Male, age 51, unknown 32.1
1947 Male, age 18, unknown 32.1
Periaquaductal grey, dorsal
nTPM: 36.6
2850 Male, age 76, both hemispheres 42.8
1840 Male, age 53, unknown 34.7
1831 Male, age 72, unknown 34.5
2464 Female, age 72, unknown 34.4
Periaquaductal grey, lateral
nTPM: 36.5
2140 Male, age 76, both hemispheres 40.7
2272 Male, age 74, both hemispheres 35.3
2053 Male, age 18, unknown 33.6
Pretectal area
nTPM: 34.3
1815 Male, age 53, unknown 35.4
2667 Female, age 75, unknown 35.3
1817 Female, age 42, unknown 35.1
2273 Male, age 74, both hemispheres 35.0
2316 Male, age 76, right hemisphere 34.3
2224 Female, age 72, unknown 33.9
2825 Male, age 18, unknown 33.9
2007 Male, age 72, unknown 33.8
1816 Male, age 51, unknown 33.7
1944 Female, age 72, unknown 33.7
2407 Male, age 75, both hemispheres 33.1
Red nucleus
nTPM: 35.3
2503 Female, age 72, unknown 37.4
1865 Male, age 51, unknown 36.9
1954 Female, age 42, unknown 36.7
2823 Male, age 76, right hemisphere 36.5
1904 Male, age 53, unknown 35.9
1821 Female, age 72, unknown 35.8
2227 Male, age 72, unknown 35.4
2785 Male, age 18, unknown 35.1
2769 Male, age 72, unknown 35.0
2725 Female, age 75, unknown 34.8
2588 Male, age 74, left hemisphere 34.0
2584 Male, age 75, left hemisphere 30.8
Substantia nigra
nTPM: 35.2
2699 Male, age 18, unknown 39.9
1916 Female, age 42, unknown 35.8
2590 Female, age 75, unknown 35.7
2665 Male, age 74, both hemispheres 35.6
1851 Male, age 51, unknown 35.2
2409 Female, age 72, unknown 35.2
2241 Male, age 72, unknown 35.0
1941 Male, age 53, unknown 34.2
1889 Female, age 72, unknown 33.4
2583 Male, age 75, right hemisphere 31.7
Superior colliculus
nTPM: 33.7
1796 Male, age 53, unknown 36.0
1995 Male, age 72, unknown 35.2
1913 Female, age 42, unknown 35.0
2587 Male, age 74, left hemisphere 34.2
1895 Male, age 76, right hemisphere 34.0
2087 Female, age 72, unknown 34.0
1839 Male, age 51, unknown 32.5
2668 Female, age 75, unknown 32.1
2261 Male, age 18, unknown 31.9
2664 Male, age 75, both hemispheres 31.9
Ventral tegmental area
nTPM: 34.6
1915 Female, age 42, unknown 35.7
2218 Male, age 76, both hemispheres 35.5
2223 Female, age 72, unknown 34.7
2410 Female, age 72, unknown 34.5
1942 Male, age 51, unknown 34.1
2021 Male, age 53, unknown 33.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 60.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 60.2
Samples: 139

Max nTPM: 270.9
Min nTPM: 27.7
Std nTPM: 38.4
Median nTPM: 45.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 270.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 267.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 178.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 162.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 156.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 144.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 140.1
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 137.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 130.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 122.5
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 116.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 57.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 57.6
FF:10158-103A5 76 years, female 57.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 3.7
Pig sample Sample description nTPM
Midbrain
nTPM: 3.7
Samples: 4

Max nTPM: 7.7
Min nTPM: 1.8
Sample A Female 7.7
Sample B Female 3.5
Sample C Male 1.8
Sample D Male 1.9
Periaqueductal gray
nTPM: 3.1
Samples: 3

Max nTPM: 3.3
Min nTPM: 3.0
Sample B Female 3.3
Sample C Male 3.1
Sample D Male 3.0
Substantia nigra
nTPM: 3.7
Samples: 4

Max nTPM: 4.3
Min nTPM: 2.9
Sample A Female 4.1
Sample B Female 3.4
Sample C Male 2.9
Sample D Male 4.3
Superior colliculi
nTPM: 3.2
Samples: 4

Max nTPM: 3.9
Min nTPM: 2.7
Sample A Female 3.3
Sample B Female 3.9
Sample C Male 2.7
Sample D Male 2.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.4
Samples: 4

Max nTPM: 2.5
Min nTPM: 2.1
Sample A Male 2.4
Sample B Male 2.1
Sample C Female 2.4
Sample D Female 2.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.