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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:262.0 nTPM
HPA:262.0 nTPM
GTEx:373.5 nTPM
FANTOM5:621.0 Scaled Tags Per Million
Pig:283.8 nTPM
Mouse:160.9 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 262.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 225.3
1870 Female, age 42, unknown 267.5
2411 Female, age 72, unknown 251.8
1830 Male, age 51, unknown 250.8
2019 Male, age 18, unknown 237.7
1833 Male, age 53, unknown 235.7
2828 Female, age 72, unknown 208.2
2219 Male, age 76, both hemispheres 204.9
2586 Male, age 75, left hemisphere 203.3
2666 Male, age 74, left hemisphere 202.2
1827 Male, age 72, unknown 190.9
Dorsal raphe nucleus
nTPM: 191.9
2750 Male, age 76, both hemispheres 272.5
1828 Male, age 53, unknown 191.4
2016 Female, age 72, unknown 181.2
2047 Male, age 72, unknown 164.5
2298 Female, age 72, unknown 150.0
Inferior colliculus
nTPM: 184.2
1890 Male, age 53, unknown 198.7
1848 Female, age 42, unknown 188.4
2849 Male, age 72, unknown 175.5
2097 Female, age 72, unknown 174.1
Median raphe nucleus
nTPM: 193.0
2220 Male, age 76, midline 193.0
Pedunculopontine tegmental nucleus
nTPM: 217.6
2334 Male, age 80, both hemispheres 237.4
1921 Female, age 85, both hemispheres 207.9
2338 Male, age 61, both hemispheres 207.5
Periaquaductal grey, anterior
nTPM: 175.4
2502 Female, age 75, unknown 192.1
1947 Male, age 18, unknown 176.5
1795 Male, age 51, unknown 157.5
Periaquaductal grey, dorsal
nTPM: 157.0
2464 Female, age 72, unknown 184.0
1831 Male, age 72, unknown 161.8
2850 Male, age 76, both hemispheres 144.7
1840 Male, age 53, unknown 137.6
Periaquaductal grey, lateral
nTPM: 160.8
2053 Male, age 18, unknown 171.3
2272 Male, age 74, both hemispheres 165.8
2140 Male, age 76, both hemispheres 145.4
Pretectal area
nTPM: 177.7
1815 Male, age 53, unknown 205.6
2316 Male, age 76, right hemisphere 198.2
2407 Male, age 75, both hemispheres 197.1
2007 Male, age 72, unknown 188.6
1817 Female, age 42, unknown 184.8
2825 Male, age 18, unknown 180.3
2667 Female, age 75, unknown 166.6
2273 Male, age 74, both hemispheres 165.2
1944 Female, age 72, unknown 157.7
2224 Female, age 72, unknown 157.4
1816 Male, age 51, unknown 153.7
Red nucleus
nTPM: 262.0
1865 Male, age 51, unknown 298.8
1821 Female, age 72, unknown 294.5
1904 Male, age 53, unknown 284.2
2227 Male, age 72, unknown 277.8
2769 Male, age 72, unknown 277.3
2503 Female, age 72, unknown 263.8
2823 Male, age 76, right hemisphere 260.4
2785 Male, age 18, unknown 254.7
2588 Male, age 74, left hemisphere 252.7
1954 Female, age 42, unknown 250.5
2725 Female, age 75, unknown 217.4
2584 Male, age 75, left hemisphere 211.8
Substantia nigra
nTPM: 193.0
1851 Male, age 51, unknown 216.9
1889 Female, age 72, unknown 206.1
2590 Female, age 75, unknown 203.6
2409 Female, age 72, unknown 200.0
2699 Male, age 18, unknown 198.4
2583 Male, age 75, right hemisphere 191.9
1916 Female, age 42, unknown 185.0
2241 Male, age 72, unknown 178.6
1941 Male, age 53, unknown 175.6
2665 Male, age 74, both hemispheres 174.1
Superior colliculus
nTPM: 202.6
1913 Female, age 42, unknown 268.1
1995 Male, age 72, unknown 238.7
2587 Male, age 74, left hemisphere 215.1
2668 Female, age 75, unknown 211.4
1895 Male, age 76, right hemisphere 206.4
1839 Male, age 51, unknown 201.0
1796 Male, age 53, unknown 183.2
2664 Male, age 75, both hemispheres 171.4
2261 Male, age 18, unknown 166.1
2087 Female, age 72, unknown 164.1
Ventral tegmental area
nTPM: 212.3
2223 Female, age 72, unknown 274.6
2410 Female, age 72, unknown 224.4
2218 Male, age 76, both hemispheres 200.1
2021 Male, age 53, unknown 196.5
1942 Male, age 51, unknown 194.2
1915 Female, age 42, unknown 184.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 373.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 373.5
Samples: 139

Max nTPM: 1229.2
Min nTPM: 135.4
Std nTPM: 177.8
Median nTPM: 335.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1229.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 1027.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1017.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1000.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 772.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 758.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 738.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 695.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 631.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 624.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 589.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 621.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 621.0
FF:10158-103A5 76 years, female 621.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 283.8
Pig sample Sample description nTPM
Midbrain
nTPM: 283.8
Samples: 4

Max nTPM: 686.3
Min nTPM: 122.8
Sample A Female 686.3
Sample B Female 187.9
Sample C Male 138.3
Sample D Male 122.8
Periaqueductal gray
nTPM: 141.0
Samples: 3

Max nTPM: 158.5
Min nTPM: 125.1
Sample B Female 158.5
Sample C Male 125.1
Sample D Male 139.5
Substantia nigra
nTPM: 225.6
Samples: 4

Max nTPM: 329.6
Min nTPM: 150.4
Sample A Female 233.5
Sample B Female 150.4
Sample C Male 189.0
Sample D Male 329.6
Superior colliculi
nTPM: 180.7
Samples: 4

Max nTPM: 218.0
Min nTPM: 116.5
Sample A Female 196.7
Sample B Female 116.5
Sample C Male 191.7
Sample D Male 218.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 160.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 160.9
Samples: 4

Max nTPM: 167.6
Min nTPM: 152.5
Sample A Male 167.6
Sample B Male 152.5
Sample C Female 157.2
Sample D Female 166.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
69549619 Antisense, RP_050222_01_F03, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.