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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:25.7 nTPM
HPA:25.7 nTPM
GTEx:25.8 nTPM
FANTOM5:211.4 Scaled Tags Per Million
Pig:128.0 nTPM
Mouse:232.6 nTPM
Allen mouse:7.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA027375Antibody HPA027380Antibody HPA027395
Glial cells Not detectedNot detectedLow
Neuronal cells HighMediumHigh







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 25.7
Sample id Sample description nTPM
Hippocampus
nTPM: 2.7
1898 Male, age 80, left hemisphere 15.1
2621 Female, age 67, right hemisphere 1.5
1855 Male, age 76, left hemisphere 0.0
1911 Female, age 85, right hemisphere 0.0
2148 Female, age 91, left hemisphere 0.0
2529 Female, age 94, left hemisphere 0.0
Dentate gyrus
nTPM: 1.3
1927 Female, age 91, both hemispheres 7.1
2010 Male, age 76, both hemispheres 0.4
2246 Female, age 85, both hemispheres 0.2
2528 Male, age 74, both hemispheres 0.0
2530 Female, age 94, left hemisphere 0.0
2531 Female, age 67, both hemispheres 0.0
Entorhinal gyrus
nTPM: 13.2
2764 Male, age 80, right hemisphere 19.9
1787 Male, age 76, left hemisphere 18.8
2613 Female, age 94, left hemisphere 17.3
1938 Female, age 85, left hemisphere 16.6
2686 Male, age 75, right hemisphere 6.7
2117 Female, age 91, right hemisphere 0.0
Hippocampus, CA1
nTPM: 3.4
2749 Male, age 80, left hemisphere 12.1
2527 Male, age 74, both hemispheres 2.8
1873 Female, age 85, both hemispheres 2.0
2045 Male, age 76, both hemispheres 0.0
2082 Female, age 91, right hemisphere 0.0
Hippocampus, CA2
nTPM: 6.1
1892 Male, age 76, both hemispheres 19.9
1940 Female, age 85, left hemisphere 8.6
1963 Male, age 80, left hemisphere 5.2
2437 Female, age 94, left hemisphere 2.7
2113 Female, age 91, right hemisphere 0.0
2249 Male, age 74, both hemispheres 0.0
Hippocampus, CA3
nTPM: 3.9
1867 Male, age 76, both hemispheres 9.5
2137 Male, age 80, left hemisphere 7.5
1891 Female, age 85, both hemispheres 6.2
2436 Male, age 74, both hemispheres 0.3
2620 Female, age 94, left hemisphere 0.0
2861 Female, age 67, both hemispheres 0.0
Parahippocampal cortex
nTPM: 15.6
1850 Male, age 80, both hemispheres 31.4
1990 Female, age 91, right hemisphere 27.3
2250 Female, age 67, right hemisphere 17.9
2532 Female, age 72, left hemisphere 17.3
1933 Female, age 85, both hemispheres 17.1
2693 Female, age 94, both hemispheres 14.8
2245 Female, age 91, both hemispheres 12.5
2622 Female, age 67, right hemisphere 8.9
2692 Male, age 74, both hemispheres 4.9
2018 Male, age 76, both hemispheres 3.8
Perirhinal gyrus
nTPM: 25.7
1847 Female, age 91, left hemisphere 38.1
1794 Male, age 80, right hemisphere 28.9
1841 Female, age 85, right hemisphere 24.6
2521 Female, age 94, right hemisphere 22.2
2848 Male, age 76, right hemisphere 14.8
Subiculum
nTPM: 7.9
1977 Female, age 85, both hemispheres 15.7
1901 Male, age 80, both hemispheres 13.8
2438 Female, age 94, left hemisphere 12.8
2619 Male, age 74, both hemispheres 5.4
2042 Male, age 76, both hemispheres 0.0
2729 Female, age 91, right hemisphere 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 25.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 25.8
Samples: 197

Max nTPM: 83.3
Min nTPM: 10.7
Std nTPM: 13.1
Median nTPM: 21.9
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 83.3
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 81.6
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 78.2
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 73.2
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 68.3
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 64.0
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 58.9
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 56.1
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 54.5
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 52.9
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 52.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 211.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 211.4
FF:10153-102I9 76 years, female 214.6
FF:10169-103B7 60 years, female 208.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 128.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 65.8
Samples: 4

Max nTPM: 95.0
Min nTPM: 39.6
Sample A Female 71.2
Sample B Female 57.3
Sample C Male 95.0
Sample D Male 39.6
Entorhinal cortex
nTPM: 73.8
Samples: 4

Max nTPM: 83.2
Min nTPM: 67.9
Sample A Female 67.9
Sample B Female 83.2
Sample C Male 72.2
Sample D Male 71.8
Subiculum
nTPM: 128.0
Samples: 4

Max nTPM: 162.3
Min nTPM: 116.2
Sample A Female 162.3
Sample B Female 116.2
Sample C Male 117.1
Sample D Male 116.4
Ventral hippocampus
nTPM: 66.8
Samples: 4

Max nTPM: 85.1
Min nTPM: 55.3
Sample A Female 85.1
Sample B Female 55.3
Sample C Male 64.7
Sample D Male 62.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 232.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 232.6
Samples: 4

Max nTPM: 288.0
Min nTPM: 203.5
Sample A Male 203.5
Sample B Male 218.8
Sample C Female 220.0
Sample D Female 288.0
Hippocampal formation
nTPM: 170.8
Samples: 4

Max nTPM: 184.0
Min nTPM: 160.5
Sample A Male 184.0
Sample B Male 167.6
Sample C Female 160.5
Sample D Female 170.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 7.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.0
72129295 Antisense, RP_051017_03_F11, Mouse strain C57BL/6J (56 days, male) 8.1
69134487 Antisense, RP_050321_03_A05, Mouse strain C57BL/6J (56 days, male) 5.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.