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PDP1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:23.4 nTPM
HPA:23.4 nTPM
GTEx:11.5 nTPM
FANTOM5:62.6 Scaled Tags Per Million
Pig:65.9 nTPM
Mouse:73.7 nTPM
Allen mouse:4.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA018483Antibody HPA019081Antibody HPA021152
Glial cells LowLowHigh
Neuronal cells MediumMediumHigh







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 23.4
Sample id Sample description nTPM
Hippocampus
nTPM: 0.0
1855 Male, age 76, left hemisphere 0.0
1898 Male, age 80, left hemisphere 0.0
1911 Female, age 85, right hemisphere 0.0
2148 Female, age 91, left hemisphere 0.0
2529 Female, age 94, left hemisphere 0.0
2621 Female, age 67, right hemisphere 0.0
Dentate gyrus
nTPM: 0.0
1927 Female, age 91, both hemispheres 0.0
2010 Male, age 76, both hemispheres 0.0
2246 Female, age 85, both hemispheres 0.0
2528 Male, age 74, both hemispheres 0.0
2530 Female, age 94, left hemisphere 0.0
2531 Female, age 67, both hemispheres 0.0
Entorhinal gyrus
nTPM: 2.9
2764 Male, age 80, right hemisphere 8.6
2613 Female, age 94, left hemisphere 5.7
1938 Female, age 85, left hemisphere 3.1
1787 Male, age 76, left hemisphere 0.0
2117 Female, age 91, right hemisphere 0.0
2686 Male, age 75, right hemisphere 0.0
Hippocampus, CA1
nTPM: 0.0
2749 Male, age 80, left hemisphere 0.4
1873 Female, age 85, both hemispheres 0.0
2045 Male, age 76, both hemispheres 0.0
2082 Female, age 91, right hemisphere 0.0
2527 Male, age 74, both hemispheres 0.0
Hippocampus, CA2
nTPM: 0.0
1892 Male, age 76, both hemispheres 0.0
1940 Female, age 85, left hemisphere 0.0
1963 Male, age 80, left hemisphere 0.0
2113 Female, age 91, right hemisphere 0.0
2249 Male, age 74, both hemispheres 0.0
2437 Female, age 94, left hemisphere 0.0
Hippocampus, CA3
nTPM: 0.2
2620 Female, age 94, left hemisphere 1.7
1867 Male, age 76, both hemispheres 0.0
1891 Female, age 85, both hemispheres 0.0
2137 Male, age 80, left hemisphere 0.0
2436 Male, age 74, both hemispheres 0.0
2861 Female, age 67, both hemispheres 0.0
Parahippocampal cortex
nTPM: 7.6
1850 Male, age 80, both hemispheres 32.2
2693 Female, age 94, both hemispheres 16.6
2532 Female, age 72, left hemisphere 11.0
1933 Female, age 85, both hemispheres 7.5
1990 Female, age 91, right hemisphere 4.7
2622 Female, age 67, right hemisphere 4.0
2018 Male, age 76, both hemispheres 0.0
2245 Female, age 91, both hemispheres 0.0
2250 Female, age 67, right hemisphere 0.0
2692 Male, age 74, both hemispheres 0.0
Perirhinal gyrus
nTPM: 23.4
1841 Female, age 85, right hemisphere 36.3
1794 Male, age 80, right hemisphere 32.9
1847 Female, age 91, left hemisphere 19.2
2521 Female, age 94, right hemisphere 19.0
2848 Male, age 76, right hemisphere 9.7
Subiculum
nTPM: 0.0
1901 Male, age 80, both hemispheres 0.0
1977 Female, age 85, both hemispheres 0.0
2042 Male, age 76, both hemispheres 0.0
2438 Female, age 94, left hemisphere 0.0
2619 Male, age 74, both hemispheres 0.0
2729 Female, age 91, right hemisphere 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 11.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 11.5
Samples: 197

Max nTPM: 80.4
Min nTPM: 2.8
Std nTPM: 8.4
Median nTPM: 9.7
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 80.4
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 50.2
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 38.8
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 38.4
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 36.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 36.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 32.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 28.9
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 27.6
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 23.1
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 22.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 62.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 62.6
FF:10169-103B7 60 years, female 80.5
FF:10153-102I9 76 years, female 44.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 65.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 27.6
Samples: 4

Max nTPM: 33.1
Min nTPM: 21.8
Sample A Female 33.1
Sample B Female 31.1
Sample C Male 21.8
Sample D Male 24.4
Entorhinal cortex
nTPM: 65.9
Samples: 4

Max nTPM: 75.2
Min nTPM: 57.0
Sample A Female 75.2
Sample B Female 61.5
Sample C Male 57.0
Sample D Male 70.0
Subiculum
nTPM: 29.8
Samples: 4

Max nTPM: 41.9
Min nTPM: 24.2
Sample A Female 41.9
Sample B Female 24.2
Sample C Male 24.6
Sample D Male 28.5
Ventral hippocampus
nTPM: 26.0
Samples: 4

Max nTPM: 30.7
Min nTPM: 20.9
Sample A Female 30.7
Sample B Female 20.9
Sample C Male 28.4
Sample D Male 23.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 73.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 73.7
Samples: 4

Max nTPM: 110.4
Min nTPM: 57.0
Sample A Male 66.5
Sample B Male 110.4
Sample C Female 57.0
Sample D Female 61.0
Hippocampal formation
nTPM: 44.9
Samples: 4

Max nTPM: 53.8
Min nTPM: 40.2
Sample A Male 53.8
Sample B Male 45.1
Sample C Female 40.2
Sample D Female 40.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.2
74357581 Antisense, RP_051005_03_C11, Mouse strain C57BL/6J (56 days, male) 4.2
72471816 Antisense, RP_051005_03_C11, Mouse strain C57BL/6J (56 days, male) 3.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.