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PGAP4
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:24.9 nTPM
HPA:24.9 nTPM
GTEx:17.4 nTPM
FANTOM5:55.9 Scaled Tags Per Million
Pig:42.8 nTPM
Mouse:53.9 nTPM
Allen mouse:11.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA011318Antibody HPA054041
Glial cells Not detectedMedium
Neuronal cells Not detectedHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 24.9
Sample id Sample description nTPM
Hippocampus
nTPM: 16.7
1898 Male, age 80, left hemisphere 32.4
1855 Male, age 76, left hemisphere 23.3
2621 Female, age 67, right hemisphere 19.0
2148 Female, age 91, left hemisphere 13.0
1911 Female, age 85, right hemisphere 7.6
2529 Female, age 94, left hemisphere 4.9
Dentate gyrus
nTPM: 17.9
2010 Male, age 76, both hemispheres 26.1
1927 Female, age 91, both hemispheres 22.5
2530 Female, age 94, left hemisphere 19.4
2246 Female, age 85, both hemispheres 16.0
2528 Male, age 74, both hemispheres 12.8
2531 Female, age 67, both hemispheres 10.9
Entorhinal gyrus
nTPM: 15.2
2613 Female, age 94, left hemisphere 19.8
1787 Male, age 76, left hemisphere 19.5
2764 Male, age 80, right hemisphere 17.6
1938 Female, age 85, left hemisphere 17.5
2686 Male, age 75, right hemisphere 9.7
2117 Female, age 91, right hemisphere 7.3
Hippocampus, CA1
nTPM: 20.5
2749 Male, age 80, left hemisphere 39.8
1873 Female, age 85, both hemispheres 22.6
2082 Female, age 91, right hemisphere 14.1
2527 Male, age 74, both hemispheres 13.8
2045 Male, age 76, both hemispheres 12.0
Hippocampus, CA2
nTPM: 17.0
1963 Male, age 80, left hemisphere 31.1
1892 Male, age 76, both hemispheres 26.3
2437 Female, age 94, left hemisphere 14.5
2249 Male, age 74, both hemispheres 11.7
2113 Female, age 91, right hemisphere 10.3
1940 Female, age 85, left hemisphere 8.2
Hippocampus, CA3
nTPM: 16.4
2137 Male, age 80, left hemisphere 29.4
2620 Female, age 94, left hemisphere 15.7
2861 Female, age 67, both hemispheres 15.4
1867 Male, age 76, both hemispheres 14.4
2436 Male, age 74, both hemispheres 13.2
1891 Female, age 85, both hemispheres 10.6
Parahippocampal cortex
nTPM: 15.5
1850 Male, age 80, both hemispheres 21.7
2693 Female, age 94, both hemispheres 19.1
1990 Female, age 91, right hemisphere 18.0
2250 Female, age 67, right hemisphere 18.0
1933 Female, age 85, both hemispheres 17.1
2245 Female, age 91, both hemispheres 16.2
2532 Female, age 72, left hemisphere 13.5
2018 Male, age 76, both hemispheres 11.8
2622 Female, age 67, right hemisphere 9.7
2692 Male, age 74, both hemispheres 9.5
Perirhinal gyrus
nTPM: 24.9
1847 Female, age 91, left hemisphere 35.5
2521 Female, age 94, right hemisphere 29.4
1794 Male, age 80, right hemisphere 23.7
1841 Female, age 85, right hemisphere 18.0
2848 Male, age 76, right hemisphere 18.0
Subiculum
nTPM: 12.3
1977 Female, age 85, both hemispheres 18.9
1901 Male, age 80, both hemispheres 17.3
2438 Female, age 94, left hemisphere 12.6
2619 Male, age 74, both hemispheres 9.5
2042 Male, age 76, both hemispheres 8.2
2729 Female, age 91, right hemisphere 7.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 17.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 17.4
Samples: 197

Max nTPM: 71.1
Min nTPM: 2.6
Std nTPM: 10.5
Median nTPM: 14.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 71.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 51.1
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 49.5
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 46.4
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 44.1
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 43.9
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 42.5
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 40.4
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 39.8
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 39.0
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 38.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 55.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 55.9
FF:10169-103B7 60 years, female 86.8
FF:10153-102I9 76 years, female 24.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 42.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 42.8
Samples: 4

Max nTPM: 53.5
Min nTPM: 32.4
Sample A Female 53.5
Sample B Female 47.8
Sample C Male 37.6
Sample D Male 32.4
Entorhinal cortex
nTPM: 31.1
Samples: 4

Max nTPM: 32.6
Min nTPM: 28.3
Sample A Female 32.6
Sample B Female 30.9
Sample C Male 32.5
Sample D Male 28.3
Subiculum
nTPM: 32.0
Samples: 4

Max nTPM: 39.7
Min nTPM: 27.0
Sample A Female 39.7
Sample B Female 29.3
Sample C Male 32.0
Sample D Male 27.0
Ventral hippocampus
nTPM: 36.1
Samples: 4

Max nTPM: 40.3
Min nTPM: 25.2
Sample A Female 39.9
Sample B Female 25.2
Sample C Male 39.1
Sample D Male 40.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 53.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 52.1
Samples: 4

Max nTPM: 55.0
Min nTPM: 49.4
Sample A Male 50.3
Sample B Male 53.7
Sample C Female 49.4
Sample D Female 55.0
Hippocampal formation
nTPM: 54.0
Samples: 4

Max nTPM: 56.4
Min nTPM: 50.3
Sample A Male 52.9
Sample B Male 56.2
Sample C Female 56.4
Sample D Female 50.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 11.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 11.4
75774671 Antisense, RP_060530_01_C08, Mouse strain C57BL/6J (56 days, male) 11.5
512768 Antisense, RP_040809_02_D06, Mouse strain C57BL/6J (56 days, male) 11.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.