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PMPCA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.6 nTPM
HPA:27.6 nTPM
GTEx:29.8 nTPM
FANTOM5:33.0 Scaled Tags Per Million
Pig:31.6 nTPM
Mouse:58.4 nTPM
Allen mouse:2.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.7
2411 Female, age 72, unknown 28.7
2586 Male, age 75, left hemisphere 28.5
2219 Male, age 76, both hemispheres 26.9
1827 Male, age 72, unknown 26.8
2828 Female, age 72, unknown 26.8
1870 Female, age 42, unknown 26.4
2019 Male, age 18, unknown 26.4
2666 Male, age 74, left hemisphere 25.9
1833 Male, age 53, unknown 25.6
1830 Male, age 51, unknown 25.1
Dorsal raphe nucleus
nTPM: 26.8
2047 Male, age 72, unknown 28.3
2298 Female, age 72, unknown 27.5
1828 Male, age 53, unknown 27.0
2750 Male, age 76, both hemispheres 26.7
2016 Female, age 72, unknown 24.6
Inferior colliculus
nTPM: 25.6
1848 Female, age 42, unknown 25.9
1890 Male, age 53, unknown 25.9
2097 Female, age 72, unknown 25.8
2849 Male, age 72, unknown 24.6
Median raphe nucleus
nTPM: 26.4
2220 Male, age 76, midline 26.4
Pedunculopontine tegmental nucleus
nTPM: 25.9
1921 Female, age 85, both hemispheres 26.7
2334 Male, age 80, both hemispheres 26.7
2338 Male, age 61, both hemispheres 24.4
Periaquaductal grey, anterior
nTPM: 27.0
1947 Male, age 18, unknown 28.1
1795 Male, age 51, unknown 26.9
2502 Female, age 75, unknown 26.1
Periaquaductal grey, dorsal
nTPM: 25.5
2464 Female, age 72, unknown 26.4
1840 Male, age 53, unknown 25.7
2850 Male, age 76, both hemispheres 25.3
1831 Male, age 72, unknown 24.7
Periaquaductal grey, lateral
nTPM: 25.3
2272 Male, age 74, both hemispheres 25.8
2053 Male, age 18, unknown 25.1
2140 Male, age 76, both hemispheres 25.1
Pretectal area
nTPM: 26.5
2007 Male, age 72, unknown 28.1
1817 Female, age 42, unknown 28.0
1944 Female, age 72, unknown 27.5
2667 Female, age 75, unknown 27.4
1816 Male, age 51, unknown 27.2
1815 Male, age 53, unknown 26.6
2273 Male, age 74, both hemispheres 26.0
2224 Female, age 72, unknown 25.8
2316 Male, age 76, right hemisphere 25.4
2825 Male, age 18, unknown 25.2
2407 Male, age 75, both hemispheres 24.3
Red nucleus
nTPM: 26.1
1821 Female, age 72, unknown 27.5
2725 Female, age 75, unknown 26.9
2588 Male, age 74, left hemisphere 26.4
2769 Male, age 72, unknown 26.3
2227 Male, age 72, unknown 26.2
2785 Male, age 18, unknown 26.2
1954 Female, age 42, unknown 26.1
2503 Female, age 72, unknown 25.8
1865 Male, age 51, unknown 25.6
1904 Male, age 53, unknown 25.6
2584 Male, age 75, left hemisphere 25.6
2823 Male, age 76, right hemisphere 24.4
Substantia nigra
nTPM: 27.6
1916 Female, age 42, unknown 31.2
1851 Male, age 51, unknown 29.7
1889 Female, age 72, unknown 28.0
1941 Male, age 53, unknown 27.9
2409 Female, age 72, unknown 27.3
2699 Male, age 18, unknown 27.2
2241 Male, age 72, unknown 27.1
2665 Male, age 74, both hemispheres 26.3
2590 Female, age 75, unknown 25.9
2583 Male, age 75, right hemisphere 25.2
Superior colliculus
nTPM: 25.6
2087 Female, age 72, unknown 26.9
1796 Male, age 53, unknown 26.5
2261 Male, age 18, unknown 26.4
2668 Female, age 75, unknown 26.1
1895 Male, age 76, right hemisphere 25.9
1839 Male, age 51, unknown 25.4
2587 Male, age 74, left hemisphere 25.3
2664 Male, age 75, both hemispheres 24.9
1995 Male, age 72, unknown 24.4
1913 Female, age 42, unknown 24.0
Ventral tegmental area
nTPM: 26.9
2410 Female, age 72, unknown 28.7
1915 Female, age 42, unknown 28.3
2218 Male, age 76, both hemispheres 27.0
1942 Male, age 51, unknown 26.6
2021 Male, age 53, unknown 26.2
2223 Female, age 72, unknown 24.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 29.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.8
Samples: 139

Max nTPM: 67.7
Min nTPM: 13.6
Std nTPM: 7.3
Median nTPM: 28.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 67.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 49.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 48.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 47.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 46.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 44.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 43.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 43.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 39.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 39.6
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 39.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.0
FF:10158-103A5 76 years, female 33.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 31.6
Pig sample Sample description nTPM
Midbrain
nTPM: 31.6
Samples: 4

Max nTPM: 41.2
Min nTPM: 24.7
Sample A Female 41.2
Sample B Female 25.2
Sample C Male 35.1
Sample D Male 24.7
Periaqueductal gray
nTPM: 22.5
Samples: 3

Max nTPM: 23.4
Min nTPM: 20.8
Sample B Female 23.4
Sample C Male 23.3
Sample D Male 20.8
Substantia nigra
nTPM: 28.0
Samples: 4

Max nTPM: 32.7
Min nTPM: 24.6
Sample A Female 32.7
Sample B Female 24.6
Sample C Male 27.9
Sample D Male 26.9
Superior colliculi
nTPM: 29.8
Samples: 4

Max nTPM: 32.4
Min nTPM: 27.6
Sample A Female 31.5
Sample B Female 27.7
Sample C Male 32.4
Sample D Male 27.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 58.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 58.4
Samples: 4

Max nTPM: 62.4
Min nTPM: 56.7
Sample A Male 56.7
Sample B Male 56.7
Sample C Female 57.9
Sample D Female 62.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.0
74357590 Antisense, RP_060117_01_A06, Mouse strain C57BL/6J (56 days, male) 2.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.