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PCBD1
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:111.8 nTPM
HPA:111.8 nTPM
GTEx:65.3 nTPM
FANTOM5:45.7 Scaled Tags Per Million
Pig:58.4 nTPM
Mouse:30.9 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA037575
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 111.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 111.6
2481 Female, age 94, left hemisphere 119.6
2289 Male, age 61, right hemisphere 114.2
2288 Male, age 75, left hemisphere 112.2
1781 Male, age 74, unknown 111.2
2290 Female, age 72, unknown 110.7
1854 Male, age 80, left hemisphere 109.3
1857 Female, age 85, left hemisphere 109.3
2846 Female, age 79, unknown 106.6
Claustrum
nTPM: 108.5
2196 Female, age 79, unknown 111.7
2198 Male, age 80, both hemispheres 111.2
2645 Female, age 72, unknown 109.8
2284 Female, age 91, both hemispheres 109.0
2568 Male, age 61, both hemispheres 108.5
2491 Male, age 75, both hemispheres 107.3
2392 Female, age 94, both hemispheres 107.2
2292 Female, age 85, both hemispheres 106.8
1956 Male, age 74, unknown 105.0
Globus pallidus, externus
nTPM: 109.1
2646 Male, age 61, right hemisphere 114.7
1996 Male, age 80, right hemisphere 111.5
2772 Female, age 79, unknown 111.4
2395 Male, age 75, both hemispheres 108.5
2567 Female, age 72, unknown 99.5
Globus pallidus, internus
nTPM: 109.0
2483 Female, age 94, right hemisphere 117.2
2287 Male, age 75, right hemisphere 112.7
2037 Male, age 80, right hemisphere 110.1
1818 Male, age 74, unknown 109.2
2778 Female, age 91, both hemispheres 108.1
2566 Female, age 72, unknown 106.0
2111 Female, age 85, right hemisphere 99.7
Nucleus accumbens
nTPM: 111.8
2286 Male, age 75, left hemisphere 115.6
1856 Female, age 91, right hemisphere 114.3
2391 Female, age 94, left hemisphere 112.0
2698 Female, age 72, unknown 111.7
2824 Male, age 61, right hemisphere 111.3
1806 Female, age 85, left hemisphere 111.1
2732 Male, age 80, right hemisphere 109.6
1783 Male, age 74, unknown 108.7
Nucleus basalis of Meynert
nTPM: 110.5
2569 Male, age 61, both hemispheres 115.9
2484 Female, age 94, left hemisphere 113.3
2821 Male, age 75, both hemispheres 108.3
2393 Male, age 80, right hemisphere 104.6
Nucleus of the diagonal band
nTPM: 111.7
1979 Male, age 74, unknown 119.4
1812 Female, age 91, both hemispheres 116.1
2775 Male, age 80, right hemisphere 111.7
2195 Female, age 85, both hemispheres 108.3
2029 Male, age 61, right hemisphere 102.8
Olfactory tubercle
nTPM: 109.5
1846 Male, age 80, right hemisphere 112.4
1998 Female, age 91, both hemispheres 111.9
2856 Male, age 75, right hemisphere 109.6
2487 Female, age 94, left hemisphere 103.8
Putamen
nTPM: 107.0
2482 Female, age 94, left hemisphere 114.2
1937 Female, age 91, right hemisphere 111.6
1838 Male, age 80, right hemisphere 108.2
2647 Male, age 75, left hemisphere 107.0
2466 Female, age 79, unknown 103.9
1829 Male, age 74, unknown 102.6
2489 Female, age 72, unknown 101.6
Septal nuclei
nTPM: 110.1
2199 Male, age 80, right hemisphere 115.0
2394 Male, age 61, left hemisphere 113.2
2009 Female, age 91, both hemispheres 111.3
2031 Female, age 72, unknown 110.5
2059 Female, age 85, both hemispheres 107.4
2629 Female, age 94, right hemisphere 106.8
1960 Male, age 74, unknown 106.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 65.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 56.9
Samples: 246

Max nTPM: 178.2
Min nTPM: 27.7
Std nTPM: 17.1
Median nTPM: 53.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 178.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 134.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 124.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 116.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 105.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 103.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 97.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 95.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 92.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 91.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 88.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 65.3
Samples: 246

Max nTPM: 238.0
Min nTPM: 28.3
Std nTPM: 20.9
Median nTPM: 62.5
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 238.0
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 178.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 133.1
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 116.3
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 115.8
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 114.7
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 111.7
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 111.7
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 107.8
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 104.1
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 102.7
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Brain - Putamen (basal ganglia)
Average nTPM: 53.8
Samples: 205

Max nTPM: 112.5
Min nTPM: 24.3
Std nTPM: 14.8
Median nTPM: 50.4
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 112.5
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 107.3
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 106.6
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 100.2
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 98.4
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 94.8
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 90.4
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 88.4
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 86.8
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 82.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 82.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 45.7
FF:10164-103B2 76 years, female 45.7
Globus pallidus
Scaled Tags Per Million: 29.3
FF:10161-103A8 76 years, female 32.7
FF:10175-103C4 60 years, female 26.0
Nucleus accumbens
Scaled Tags Per Million: 42.7
FF:10037-101F1 23-56 years, mixed 42.7
Putamen
Scaled Tags Per Million: 36.4
FF:10176-103C5 60 years, female 36.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 58.4
Pig sample Sample description nTPM
Caudate
nTPM: 41.9
Samples: 4

Max nTPM: 50.8
Min nTPM: 31.3
Sample A Female 50.0
Sample B Female 50.8
Sample C Male 35.4
Sample D Male 31.3
Putamen
nTPM: 36.6
Samples: 4

Max nTPM: 47.4
Min nTPM: 30.6
Sample A Female 47.4
Sample B Female 36.7
Sample C Male 30.6
Sample D Male 31.7
Septum
nTPM: 58.4
Samples: 4

Max nTPM: 67.0
Min nTPM: 45.4
Sample A Female 64.7
Sample B Female 56.6
Sample C Male 67.0
Sample D Male 45.4
Ventral pallidum
nTPM: 46.1
Samples: 4

Max nTPM: 54.5
Min nTPM: 35.0
Sample A Female 54.5
Sample B Female 50.4
Sample C Male 44.4
Sample D Male 35.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 30.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 11.6
Samples: 4

Max nTPM: 13.1
Min nTPM: 10.3
Sample A Male 12.1
Sample B Male 13.1
Sample C Female 10.3
Sample D Female 10.8
Septum
nTPM: 31.0
Samples: 4

Max nTPM: 45.2
Min nTPM: 22.7
Sample A Male 45.2
Sample B Male 22.7
Sample C Female 25.2
Sample D Female 30.7
Ventral forebrain
nTPM: 13.5
Samples: 4

Max nTPM: 24.4
Min nTPM: 8.3
Sample A Male 10.0
Sample B Male 24.4
Sample C Female 8.3
Sample D Female 11.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
1803 Antisense, RP_040604_01_B05, Mouse strain C57BL/6J (56 days, male) 0.1
1802 Antisense, RP_040604_01_B05, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
1803 Antisense, RP_040604_01_B05, Mouse strain C57BL/6J (56 days, male) 0.1
1802 Antisense, RP_040604_01_B05, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.