ABOUTMENU
HELP
NEWS
CYB5A
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:39.7 nTPM
HPA:39.7 nTPM
GTEx:44.2 nTPM
FANTOM5:42.3 Scaled Tags Per Million
Pig:45.1 nTPM
Mouse:184.2 nTPM
Allen mouse:1.9 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA047548Antibody HPA058547Antibody CAB006333
Glial cells Not detectedNot detectedNot detected
Neuronal cells Not detectedNot detected-






BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 39.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 38.6
1854 Male, age 80, left hemisphere 41.5
2481 Female, age 94, left hemisphere 40.3
1857 Female, age 85, left hemisphere 39.8
2288 Male, age 75, left hemisphere 38.3
2290 Female, age 72, unknown 38.1
2846 Female, age 79, unknown 38.0
2289 Male, age 61, right hemisphere 36.5
1781 Male, age 74, unknown 36.0
Claustrum
nTPM: 37.3
1956 Male, age 74, unknown 38.2
2196 Female, age 79, unknown 38.1
2645 Female, age 72, unknown 37.7
2292 Female, age 85, both hemispheres 37.6
2491 Male, age 75, both hemispheres 37.2
2198 Male, age 80, both hemispheres 36.9
2568 Male, age 61, both hemispheres 36.9
2392 Female, age 94, both hemispheres 36.6
2284 Female, age 91, both hemispheres 36.5
Globus pallidus, externus
nTPM: 39.2
1996 Male, age 80, right hemisphere 41.2
2772 Female, age 79, unknown 41.0
2395 Male, age 75, both hemispheres 39.1
2646 Male, age 61, right hemisphere 37.8
2567 Female, age 72, unknown 37.1
Globus pallidus, internus
nTPM: 39.7
2287 Male, age 75, right hemisphere 41.9
2778 Female, age 91, both hemispheres 41.0
1818 Male, age 74, unknown 40.2
2483 Female, age 94, right hemisphere 39.3
2037 Male, age 80, right hemisphere 38.9
2111 Female, age 85, right hemisphere 38.6
2566 Female, age 72, unknown 38.1
Nucleus accumbens
nTPM: 37.7
2286 Male, age 75, left hemisphere 39.9
2391 Female, age 94, left hemisphere 39.5
1806 Female, age 85, left hemisphere 38.2
1856 Female, age 91, right hemisphere 37.1
2698 Female, age 72, unknown 37.1
2732 Male, age 80, right hemisphere 36.8
1783 Male, age 74, unknown 36.6
2824 Male, age 61, right hemisphere 36.2
Nucleus basalis of Meynert
nTPM: 38.1
2821 Male, age 75, both hemispheres 39.4
2393 Male, age 80, right hemisphere 38.7
2569 Male, age 61, both hemispheres 37.5
2484 Female, age 94, left hemisphere 36.8
Nucleus of the diagonal band
nTPM: 37.3
2195 Female, age 85, both hemispheres 37.8
2029 Male, age 61, right hemisphere 37.5
1812 Female, age 91, both hemispheres 37.3
1979 Male, age 74, unknown 37.0
2775 Male, age 80, right hemisphere 36.8
Olfactory tubercle
nTPM: 36.7
1846 Male, age 80, right hemisphere 37.2
2856 Male, age 75, right hemisphere 36.7
2487 Female, age 94, left hemisphere 36.5
1998 Female, age 91, both hemispheres 36.4
Putamen
nTPM: 38.3
2482 Female, age 94, left hemisphere 40.3
1838 Male, age 80, right hemisphere 38.9
2489 Female, age 72, unknown 38.4
1937 Female, age 91, right hemisphere 38.3
2466 Female, age 79, unknown 38.1
2647 Male, age 75, left hemisphere 37.6
1829 Male, age 74, unknown 36.6
Septal nuclei
nTPM: 36.3
1960 Male, age 74, unknown 36.8
2059 Female, age 85, both hemispheres 36.8
2394 Male, age 61, left hemisphere 36.5
2199 Male, age 80, right hemisphere 36.4
2031 Female, age 72, unknown 36.0
2629 Female, age 94, right hemisphere 36.0
2009 Female, age 91, both hemispheres 35.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 44.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 42.6
Samples: 246

Max nTPM: 109.3
Min nTPM: 20.6
Std nTPM: 13.4
Median nTPM: 39.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 109.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 99.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 92.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 90.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 81.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 80.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 80.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 79.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 78.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 74.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 72.3
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 37.5
Samples: 246

Max nTPM: 95.9
Min nTPM: 18.2
Std nTPM: 12.5
Median nTPM: 33.3
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 95.9
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 94.5
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 88.1
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 80.2
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 73.2
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 68.5
GTEX-QVUS-0011-R6A-SM-3GACX 60-69 years, female 67.9
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 66.9
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 65.7
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 64.4
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 63.4
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 44.2
Samples: 205

Max nTPM: 100.4
Min nTPM: 17.6
Std nTPM: 13.1
Median nTPM: 41.5
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 100.4
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 98.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 96.5
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 92.9
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 83.4
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 80.0
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 77.3
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 73.5
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 72.0
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 71.3
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 71.1
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 22.7
FF:10164-103B2 76 years, female 22.7
Globus pallidus
Scaled Tags Per Million: 42.3
FF:10175-103C4 60 years, female 45.7
FF:10161-103A8 76 years, female 38.8
Nucleus accumbens
Scaled Tags Per Million: 18.8
FF:10037-101F1 23-56 years, mixed 18.8
Putamen
Scaled Tags Per Million: 26.5
FF:10176-103C5 60 years, female 26.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 45.1
Pig sample Sample description nTPM
Caudate
nTPM: 35.0
Samples: 4

Max nTPM: 39.9
Min nTPM: 31.7
Sample A Female 31.7
Sample B Female 35.0
Sample C Male 39.9
Sample D Male 33.4
Putamen
nTPM: 45.1
Samples: 4

Max nTPM: 65.3
Min nTPM: 37.7
Sample A Female 38.2
Sample B Female 39.3
Sample C Male 65.3
Sample D Male 37.7
Septum
nTPM: 32.2
Samples: 4

Max nTPM: 37.1
Min nTPM: 26.6
Sample A Female 37.1
Sample B Female 34.0
Sample C Male 31.0
Sample D Male 26.6
Ventral pallidum
nTPM: 33.1
Samples: 4

Max nTPM: 36.7
Min nTPM: 28.9
Sample A Female 35.9
Sample B Female 36.7
Sample C Male 28.9
Sample D Male 30.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 184.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 184.2
Samples: 4

Max nTPM: 194.5
Min nTPM: 174.8
Sample A Male 174.8
Sample B Male 178.9
Sample C Female 194.5
Sample D Female 188.6
Septum
nTPM: 145.3
Samples: 4

Max nTPM: 162.5
Min nTPM: 128.1
Sample A Male 128.1
Sample B Male 143.1
Sample C Female 147.3
Sample D Female 162.5
Ventral forebrain
nTPM: 151.5
Samples: 4

Max nTPM: 175.1
Min nTPM: 128.5
Sample A Male 145.9
Sample B Male 128.5
Sample C Female 175.1
Sample D Female 156.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.9
76098399 Antisense, RP_060626_01_G12, Mouse strain C57BL/6J (56 days, male) 2.0
75043146 Antisense, RP_060220_02_G07, Mouse strain C57BL/6J (56 days, male) 1.8
Pallidum
Expression energy: 1.0
76098399 Antisense, RP_060626_01_G12, Mouse strain C57BL/6J (56 days, male) 1.0
75043146 Antisense, RP_060220_02_G07, Mouse strain C57BL/6J (56 days, male) 1.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.