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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:58.9 nTPM
HPA:58.9 nTPM
GTEx:150.5 nTPM
FANTOM5:142.7 Scaled Tags Per Million
Pig:101.9 nTPM
Mouse:316.2 nTPM
Allen mouse:23.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA013136Antibody HPA074618
Glial cells Not detectedNot detected
Neuronal cells LowLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 58.9
Sample id Sample description nTPM
Hippocampus
nTPM: 51.2
1898 Male, age 80, left hemisphere 58.4
2621 Female, age 67, right hemisphere 53.1
1911 Female, age 85, right hemisphere 51.0
2148 Female, age 91, left hemisphere 50.7
1855 Male, age 76, left hemisphere 50.4
2529 Female, age 94, left hemisphere 43.7
Dentate gyrus
nTPM: 55.0
1927 Female, age 91, both hemispheres 63.2
2530 Female, age 94, left hemisphere 61.3
2528 Male, age 74, both hemispheres 56.3
2010 Male, age 76, both hemispheres 52.0
2246 Female, age 85, both hemispheres 49.1
2531 Female, age 67, both hemispheres 47.9
Entorhinal gyrus
nTPM: 50.5
2764 Male, age 80, right hemisphere 57.7
2613 Female, age 94, left hemisphere 54.2
1938 Female, age 85, left hemisphere 53.7
1787 Male, age 76, left hemisphere 51.3
2117 Female, age 91, right hemisphere 43.2
2686 Male, age 75, right hemisphere 42.9
Hippocampus, CA1
nTPM: 58.9
2749 Male, age 80, left hemisphere 71.2
2082 Female, age 91, right hemisphere 61.8
2527 Male, age 74, both hemispheres 57.4
1873 Female, age 85, both hemispheres 54.7
2045 Male, age 76, both hemispheres 49.5
Hippocampus, CA2
nTPM: 57.5
1892 Male, age 76, both hemispheres 72.0
2249 Male, age 74, both hemispheres 69.5
1963 Male, age 80, left hemisphere 56.7
2437 Female, age 94, left hemisphere 52.1
2113 Female, age 91, right hemisphere 48.9
1940 Female, age 85, left hemisphere 45.9
Hippocampus, CA3
nTPM: 58.1
2436 Male, age 74, both hemispheres 77.8
2137 Male, age 80, left hemisphere 62.9
2620 Female, age 94, left hemisphere 61.6
1867 Male, age 76, both hemispheres 51.8
1891 Female, age 85, both hemispheres 48.4
2861 Female, age 67, both hemispheres 45.9
Parahippocampal cortex
nTPM: 54.3
2532 Female, age 72, left hemisphere 63.2
2245 Female, age 91, both hemispheres 59.4
1990 Female, age 91, right hemisphere 59.3
1850 Male, age 80, both hemispheres 59.2
2693 Female, age 94, both hemispheres 56.3
2250 Female, age 67, right hemisphere 54.9
1933 Female, age 85, both hemispheres 54.6
2018 Male, age 76, both hemispheres 53.3
2622 Female, age 67, right hemisphere 47.3
2692 Male, age 74, both hemispheres 35.3
Perirhinal gyrus
nTPM: 57.2
1847 Female, age 91, left hemisphere 61.2
1841 Female, age 85, right hemisphere 60.7
2521 Female, age 94, right hemisphere 59.0
1794 Male, age 80, right hemisphere 57.3
2848 Male, age 76, right hemisphere 47.5
Subiculum
nTPM: 46.8
1901 Male, age 80, both hemispheres 54.7
1977 Female, age 85, both hemispheres 53.2
2619 Male, age 74, both hemispheres 46.4
2042 Male, age 76, both hemispheres 46.2
2729 Female, age 91, right hemisphere 45.2
2438 Female, age 94, left hemisphere 35.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 150.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 150.5
Samples: 197

Max nTPM: 426.9
Min nTPM: 18.7
Std nTPM: 89.0
Median nTPM: 129.7
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 426.9
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 394.9
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 381.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 376.0
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 364.3
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 359.6
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 335.8
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 332.6
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 330.9
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 324.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 321.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 142.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 142.7
FF:10169-103B7 60 years, female 229.1
FF:10153-102I9 76 years, female 56.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 101.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 101.9
Samples: 4

Max nTPM: 132.2
Min nTPM: 68.1
Sample A Female 132.2
Sample B Female 121.9
Sample C Male 68.1
Sample D Male 85.2
Entorhinal cortex
nTPM: 89.8
Samples: 4

Max nTPM: 108.7
Min nTPM: 69.5
Sample A Female 91.7
Sample B Female 108.7
Sample C Male 89.1
Sample D Male 69.5
Subiculum
nTPM: 81.1
Samples: 4

Max nTPM: 94.4
Min nTPM: 75.7
Sample A Female 94.4
Sample B Female 75.7
Sample C Male 77.3
Sample D Male 77.0
Ventral hippocampus
nTPM: 100.7
Samples: 4

Max nTPM: 139.0
Min nTPM: 71.4
Sample A Female 139.0
Sample B Female 71.4
Sample C Male 105.2
Sample D Male 87.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 316.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 316.2
Samples: 4

Max nTPM: 384.8
Min nTPM: 256.5
Sample A Male 323.3
Sample B Male 384.8
Sample C Female 300.1
Sample D Female 256.5
Hippocampal formation
nTPM: 293.0
Samples: 4

Max nTPM: 331.1
Min nTPM: 276.8
Sample A Male 331.1
Sample B Male 276.8
Sample C Female 281.8
Sample D Female 282.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 23.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 23.5
71608208 Antisense, RP_050927_01_B04, Mouse strain C57BL/6J (56 days, male) 24.5
75773511 Antisense, RP_060530_01_A01, Mouse strain C57BL/6J (56 days, male) 22.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.