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TRAPPC2L
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:56.7 nTPM
HPA:56.7 nTPM
GTEx:73.4 nTPM
FANTOM5:58.8 Scaled Tags Per Million
Pig:40.9 nTPM
Mouse:37.9 nTPM
Allen mouse:1.8 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA041714
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 56.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 55.4
1857 Female, age 85, left hemisphere 59.8
2481 Female, age 94, left hemisphere 57.1
1854 Male, age 80, left hemisphere 56.7
2288 Male, age 75, left hemisphere 56.0
2846 Female, age 79, unknown 55.6
1781 Male, age 74, unknown 53.8
2290 Female, age 72, unknown 53.1
2289 Male, age 61, right hemisphere 51.1
Claustrum
nTPM: 54.1
2196 Female, age 79, unknown 56.7
2198 Male, age 80, both hemispheres 56.6
2491 Male, age 75, both hemispheres 55.1
1956 Male, age 74, unknown 55.0
2284 Female, age 91, both hemispheres 54.0
2568 Male, age 61, both hemispheres 53.3
2392 Female, age 94, both hemispheres 52.2
2645 Female, age 72, unknown 52.1
2292 Female, age 85, both hemispheres 51.5
Globus pallidus, externus
nTPM: 56.0
2395 Male, age 75, both hemispheres 59.2
1996 Male, age 80, right hemisphere 58.4
2772 Female, age 79, unknown 58.2
2567 Female, age 72, unknown 53.1
2646 Male, age 61, right hemisphere 51.0
Globus pallidus, internus
nTPM: 55.7
2287 Male, age 75, right hemisphere 61.2
2483 Female, age 94, right hemisphere 57.7
2111 Female, age 85, right hemisphere 56.0
1818 Male, age 74, unknown 55.1
2778 Female, age 91, both hemispheres 54.2
2037 Male, age 80, right hemisphere 53.3
2566 Female, age 72, unknown 52.2
Nucleus accumbens
nTPM: 56.4
1856 Female, age 91, right hemisphere 63.2
1806 Female, age 85, left hemisphere 59.3
2286 Male, age 75, left hemisphere 58.9
1783 Male, age 74, unknown 55.7
2824 Male, age 61, right hemisphere 55.4
2698 Female, age 72, unknown 53.9
2732 Male, age 80, right hemisphere 52.6
2391 Female, age 94, left hemisphere 52.5
Nucleus basalis of Meynert
nTPM: 54.6
2484 Female, age 94, left hemisphere 56.3
2569 Male, age 61, both hemispheres 55.1
2393 Male, age 80, right hemisphere 54.1
2821 Male, age 75, both hemispheres 52.9
Nucleus of the diagonal band
nTPM: 56.7
2775 Male, age 80, right hemisphere 61.9
2195 Female, age 85, both hemispheres 58.0
1812 Female, age 91, both hemispheres 57.0
2029 Male, age 61, right hemisphere 53.5
1979 Male, age 74, unknown 53.3
Olfactory tubercle
nTPM: 55.0
1846 Male, age 80, right hemisphere 58.8
1998 Female, age 91, both hemispheres 55.5
2487 Female, age 94, left hemisphere 54.7
2856 Male, age 75, right hemisphere 51.0
Putamen
nTPM: 55.1
1937 Female, age 91, right hemisphere 59.5
1838 Male, age 80, right hemisphere 57.3
2482 Female, age 94, left hemisphere 56.7
2466 Female, age 79, unknown 55.5
2647 Male, age 75, left hemisphere 54.4
2489 Female, age 72, unknown 52.1
1829 Male, age 74, unknown 50.1
Septal nuclei
nTPM: 55.7
2031 Female, age 72, unknown 60.6
1960 Male, age 74, unknown 59.0
2394 Male, age 61, left hemisphere 55.7
2009 Female, age 91, both hemispheres 54.9
2059 Female, age 85, both hemispheres 54.1
2199 Male, age 80, right hemisphere 53.0
2629 Female, age 94, right hemisphere 52.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 73.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 58.6
Samples: 246

Max nTPM: 171.6
Min nTPM: 19.4
Std nTPM: 22.2
Median nTPM: 55.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 171.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 141.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 124.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 120.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 119.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 118.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 113.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 107.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 106.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 104.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 102.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 73.4
Samples: 246

Max nTPM: 180.8
Min nTPM: 19.9
Std nTPM: 23.6
Median nTPM: 71.6
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 180.8
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 143.0
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 140.7
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 130.1
GTEX-1ICLZ-0011-R6b-SM-A9G3A 60-69 years, male 129.0
GTEX-1IY9M-0011-R6a-SM-D4P28 60-69 years, male 128.6
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 127.6
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 126.7
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 119.8
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 118.3
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 118.0
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Brain - Putamen (basal ganglia)
Average nTPM: 61.7
Samples: 205

Max nTPM: 124.3
Min nTPM: 22.5
Std nTPM: 19.0
Median nTPM: 60.2
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 124.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 117.0
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 113.3
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 106.9
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 105.2
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 104.6
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 104.6
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 100.9
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 99.5
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 99.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 96.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 58.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 47.3
FF:10164-103B2 76 years, female 47.3
Globus pallidus
Scaled Tags Per Million: 44.7
FF:10175-103C4 60 years, female 56.0
FF:10161-103A8 76 years, female 33.4
Nucleus accumbens
Scaled Tags Per Million: 45.3
FF:10037-101F1 23-56 years, mixed 45.3
Putamen
Scaled Tags Per Million: 58.8
FF:10176-103C5 60 years, female 58.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 40.9
Pig sample Sample description nTPM
Caudate
nTPM: 35.9
Samples: 4

Max nTPM: 40.7
Min nTPM: 31.1
Sample A Female 37.6
Sample B Female 40.7
Sample C Male 31.1
Sample D Male 34.0
Putamen
nTPM: 38.3
Samples: 4

Max nTPM: 50.4
Min nTPM: 28.8
Sample A Female 50.4
Sample B Female 28.8
Sample C Male 34.6
Sample D Male 39.2
Septum
nTPM: 40.9
Samples: 4

Max nTPM: 48.7
Min nTPM: 34.9
Sample A Female 43.8
Sample B Female 34.9
Sample C Male 48.7
Sample D Male 36.3
Ventral pallidum
nTPM: 35.7
Samples: 4

Max nTPM: 38.7
Min nTPM: 27.3
Sample A Female 27.3
Sample B Female 38.3
Sample C Male 38.5
Sample D Male 38.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 37.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 37.9
Samples: 4

Max nTPM: 38.7
Min nTPM: 36.0
Sample A Male 38.6
Sample B Male 38.7
Sample C Female 36.0
Sample D Female 38.2
Septum
nTPM: 37.7
Samples: 4

Max nTPM: 38.8
Min nTPM: 35.1
Sample A Male 38.2
Sample B Male 38.8
Sample C Female 38.5
Sample D Female 35.1
Ventral forebrain
nTPM: 37.4
Samples: 4

Max nTPM: 42.9
Min nTPM: 34.3
Sample A Male 34.3
Sample B Male 37.0
Sample C Female 42.9
Sample D Female 35.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.7
68744630 Antisense, RP_050208_01_C08, Mouse strain C57BL/6J (56 days, male) 1.7
Pallidum
Expression energy: 1.8
68744630 Antisense, RP_050208_01_C08, Mouse strain C57BL/6J (56 days, male) 1.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.