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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni
Consensus:47.9 nTPM
HPA:47.9 nTPM
GTEx:68.7 nTPM
FANTOM5:197.5 Scaled Tags Per Million
Mouse:64.0 nTPM
Allen mouse:8.4 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA018883
Glial cells High
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 47.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 41.7
2289 Male, age 61, right hemisphere 54.3
2288 Male, age 75, left hemisphere 50.6
2846 Female, age 79, unknown 47.1
2290 Female, age 72, unknown 42.4
1781 Male, age 74, unknown 39.1
1857 Female, age 85, left hemisphere 37.8
1854 Male, age 80, left hemisphere 32.5
2481 Female, age 94, left hemisphere 30.1
Claustrum
nTPM: 45.2
2292 Female, age 85, both hemispheres 64.8
2568 Male, age 61, both hemispheres 53.8
2645 Female, age 72, unknown 52.1
2284 Female, age 91, both hemispheres 51.8
2196 Female, age 79, unknown 47.5
1956 Male, age 74, unknown 47.3
2198 Male, age 80, both hemispheres 35.7
2491 Male, age 75, both hemispheres 28.9
2392 Female, age 94, both hemispheres 24.9
Globus pallidus, externus
nTPM: 44.2
2646 Male, age 61, right hemisphere 69.4
2567 Female, age 72, unknown 60.0
2395 Male, age 75, both hemispheres 33.8
1996 Male, age 80, right hemisphere 31.2
2772 Female, age 79, unknown 26.4
Globus pallidus, internus
nTPM: 43.0
2566 Female, age 72, unknown 72.7
1818 Male, age 74, unknown 45.5
2287 Male, age 75, right hemisphere 42.7
2037 Male, age 80, right hemisphere 37.0
2778 Female, age 91, both hemispheres 36.8
2111 Female, age 85, right hemisphere 36.3
2483 Female, age 94, right hemisphere 30.0
Nucleus accumbens
nTPM: 39.7
2698 Female, age 72, unknown 62.4
1783 Male, age 74, unknown 40.9
2824 Male, age 61, right hemisphere 39.9
1856 Female, age 91, right hemisphere 38.8
2286 Male, age 75, left hemisphere 38.2
2391 Female, age 94, left hemisphere 36.8
1806 Female, age 85, left hemisphere 33.5
2732 Male, age 80, right hemisphere 27.1
Nucleus basalis of Meynert
nTPM: 47.9
2569 Male, age 61, both hemispheres 74.7
2821 Male, age 75, both hemispheres 56.2
2393 Male, age 80, right hemisphere 32.5
2484 Female, age 94, left hemisphere 28.1
Nucleus of the diagonal band
nTPM: 39.6
2195 Female, age 85, both hemispheres 49.7
1979 Male, age 74, unknown 41.7
2775 Male, age 80, right hemisphere 37.7
1812 Female, age 91, both hemispheres 36.1
2029 Male, age 61, right hemisphere 32.6
Olfactory tubercle
nTPM: 38.0
2856 Male, age 75, right hemisphere 50.0
1846 Male, age 80, right hemisphere 40.0
1998 Female, age 91, both hemispheres 35.8
2487 Female, age 94, left hemisphere 26.2
Putamen
nTPM: 41.6
2647 Male, age 75, left hemisphere 63.2
1829 Male, age 74, unknown 49.3
1838 Male, age 80, right hemisphere 45.1
2489 Female, age 72, unknown 38.8
1937 Female, age 91, right hemisphere 37.8
2482 Female, age 94, left hemisphere 31.3
2466 Female, age 79, unknown 25.8
Septal nuclei
nTPM: 34.5
2629 Female, age 94, right hemisphere 61.5
2059 Female, age 85, both hemispheres 33.7
1960 Male, age 74, unknown 33.4
2009 Female, age 91, both hemispheres 32.0
2199 Male, age 80, right hemisphere 31.5
2394 Male, age 61, left hemisphere 25.7
2031 Female, age 72, unknown 24.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 68.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 67.0
Samples: 246

Max nTPM: 110.0
Min nTPM: 39.5
Std nTPM: 10.6
Median nTPM: 67.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 110.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 100.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 97.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 95.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 90.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 89.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 88.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 88.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 87.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 87.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 85.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 68.7
Samples: 246

Max nTPM: 109.0
Min nTPM: 28.6
Std nTPM: 11.4
Median nTPM: 68.8
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 109.0
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 103.4
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 99.5
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 97.5
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 95.7
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 94.1
GTEX-12ZZY-0011-R6b-SM-5EGLA 60-69 years, male 93.3
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 90.2
GTEX-NL4W-0011-R6a-SM-2I3GA 50-59 years, male 90.2
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 90.1
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 89.0
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Brain - Putamen (basal ganglia)
Average nTPM: 67.1
Samples: 205

Max nTPM: 136.0
Min nTPM: 41.2
Std nTPM: 12.2
Median nTPM: 66.2
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 136.0
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 114.3
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 105.9
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 100.3
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 95.3
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 91.2
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 89.5
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 88.7
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 88.3
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 88.2
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 88.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 197.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 184.1
FF:10164-103B2 76 years, female 184.1
Globus pallidus
Scaled Tags Per Million: 172.0
FF:10161-103A8 76 years, female 207.6
FF:10175-103C4 60 years, female 136.5
Nucleus accumbens
Scaled Tags Per Million: 197.5
FF:10037-101F1 23-56 years, mixed 197.5
Putamen
Scaled Tags Per Million: 171.1
FF:10176-103C5 60 years, female 171.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 64.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 64.0
Samples: 4

Max nTPM: 71.0
Min nTPM: 56.9
Sample A Male 58.4
Sample B Male 56.9
Sample C Female 69.7
Sample D Female 71.0
Septum
nTPM: 54.6
Samples: 4

Max nTPM: 58.9
Min nTPM: 52.7
Sample A Male 53.2
Sample B Male 53.6
Sample C Female 52.7
Sample D Female 58.9
Ventral forebrain
nTPM: 59.2
Samples: 4

Max nTPM: 67.8
Min nTPM: 50.5
Sample A Male 50.5
Sample B Male 64.1
Sample C Female 54.3
Sample D Female 67.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 8.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 8.4
68668024 Antisense, RP_050203_01_C07, Mouse strain C57BL/6J (56 days, male) 14.4
70813251 Antisense, RP_050712_03_E03, Mouse strain C57BL/6J (56 days, male) 2.4
Pallidum
Expression energy: 7.0
68668024 Antisense, RP_050203_01_C07, Mouse strain C57BL/6J (56 days, male) 12.3
70813251 Antisense, RP_050712_03_E03, Mouse strain C57BL/6J (56 days, male) 1.7

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.