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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:44.2 nTPM
HPA:44.2 nTPM
GTEx:64.2 nTPM
FANTOM5:165.8 Scaled Tags Per Million
Mouse:57.4 nTPM
Allen mouse:8.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA018883
Glial cells High
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 44.2
Sample id Sample description nTPM
Hippocampus
nTPM: 39.2
2621 Female, age 67, right hemisphere 58.9
2529 Female, age 94, left hemisphere 44.1
1855 Male, age 76, left hemisphere 38.8
1898 Male, age 80, left hemisphere 32.0
2148 Female, age 91, left hemisphere 31.0
1911 Female, age 85, right hemisphere 30.4
Dentate gyrus
nTPM: 35.7
2530 Female, age 94, left hemisphere 46.9
2531 Female, age 67, both hemispheres 39.4
2246 Female, age 85, both hemispheres 38.2
2010 Male, age 76, both hemispheres 36.5
1927 Female, age 91, both hemispheres 29.3
2528 Male, age 74, both hemispheres 23.9
Entorhinal gyrus
nTPM: 43.6
2613 Female, age 94, left hemisphere 55.8
2686 Male, age 75, right hemisphere 53.3
2764 Male, age 80, right hemisphere 43.3
1938 Female, age 85, left hemisphere 38.0
1787 Male, age 76, left hemisphere 37.8
2117 Female, age 91, right hemisphere 33.3
Hippocampus, CA1
nTPM: 34.6
1873 Female, age 85, both hemispheres 40.2
2045 Male, age 76, both hemispheres 37.6
2749 Male, age 80, left hemisphere 36.0
2082 Female, age 91, right hemisphere 30.3
2527 Male, age 74, both hemispheres 28.8
Hippocampus, CA2
nTPM: 29.3
2437 Female, age 94, left hemisphere 35.7
1892 Male, age 76, both hemispheres 31.1
2113 Female, age 91, right hemisphere 30.2
1940 Female, age 85, left hemisphere 28.4
1963 Male, age 80, left hemisphere 27.6
2249 Male, age 74, both hemispheres 22.5
Hippocampus, CA3
nTPM: 44.2
2620 Female, age 94, left hemisphere 74.3
2861 Female, age 67, both hemispheres 58.7
1867 Male, age 76, both hemispheres 39.0
2137 Male, age 80, left hemisphere 37.9
1891 Female, age 85, both hemispheres 32.5
2436 Male, age 74, both hemispheres 23.1
Parahippocampal cortex
nTPM: 41.4
2622 Female, age 67, right hemisphere 63.9
2692 Male, age 74, both hemispheres 55.2
2245 Female, age 91, both hemispheres 48.9
2532 Female, age 72, left hemisphere 40.8
1850 Male, age 80, both hemispheres 39.8
2693 Female, age 94, both hemispheres 37.6
2018 Male, age 76, both hemispheres 37.1
1933 Female, age 85, both hemispheres 33.4
1990 Female, age 91, right hemisphere 29.2
2250 Female, age 67, right hemisphere 27.7
Perirhinal gyrus
nTPM: 37.6
1794 Male, age 80, right hemisphere 49.2
2848 Male, age 76, right hemisphere 39.7
1841 Female, age 85, right hemisphere 35.0
1847 Female, age 91, left hemisphere 33.7
2521 Female, age 94, right hemisphere 30.6
Subiculum
nTPM: 43.3
2619 Male, age 74, both hemispheres 61.0
2438 Female, age 94, left hemisphere 53.5
2042 Male, age 76, both hemispheres 53.4
1901 Male, age 80, both hemispheres 38.9
1977 Female, age 85, both hemispheres 28.3
2729 Female, age 91, right hemisphere 24.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 64.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 64.2
Samples: 197

Max nTPM: 109.5
Min nTPM: 29.8
Std nTPM: 11.0
Median nTPM: 63.0
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 109.5
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 95.6
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 95.5
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 91.2
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 88.3
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 87.6
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 86.7
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 86.7
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 86.4
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 84.4
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 84.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 165.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 165.8
FF:10153-102I9 76 years, female 199.9
FF:10169-103B7 60 years, female 131.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 57.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 56.3
Samples: 4

Max nTPM: 60.3
Min nTPM: 52.5
Sample A Male 54.3
Sample B Male 52.5
Sample C Female 58.0
Sample D Female 60.3
Hippocampal formation
nTPM: 57.4
Samples: 4

Max nTPM: 61.6
Min nTPM: 54.6
Sample A Male 54.7
Sample B Male 61.6
Sample C Female 58.7
Sample D Female 54.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 8.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.8
68668024 Antisense, RP_050203_01_C07, Mouse strain C57BL/6J (56 days, male) 15.3
70813251 Antisense, RP_050712_03_E03, Mouse strain C57BL/6J (56 days, male) 2.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.