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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.2 nTPM
HPA:40.2 nTPM
GTEx:63.0 nTPM
FANTOM5:205.7 Scaled Tags Per Million
Mouse:59.2 nTPM
Allen mouse:6.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 40.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.2
2586 Male, age 75, left hemisphere 53.9
1833 Male, age 53, unknown 47.2
2219 Male, age 76, both hemispheres 47.0
2666 Male, age 74, left hemisphere 45.8
2828 Female, age 72, unknown 42.4
1830 Male, age 51, unknown 40.7
1827 Male, age 72, unknown 38.2
1870 Female, age 42, unknown 33.4
2019 Male, age 18, unknown 30.7
2411 Female, age 72, unknown 22.7
Dorsal raphe nucleus
nTPM: 28.5
2750 Male, age 76, both hemispheres 33.7
1828 Male, age 53, unknown 32.7
2016 Female, age 72, unknown 28.8
2047 Male, age 72, unknown 27.0
2298 Female, age 72, unknown 20.4
Inferior colliculus
nTPM: 33.6
2849 Male, age 72, unknown 58.4
1848 Female, age 42, unknown 31.8
1890 Male, age 53, unknown 29.2
2097 Female, age 72, unknown 14.7
Median raphe nucleus
nTPM: 40.1
2220 Male, age 76, midline 40.1
Pedunculopontine tegmental nucleus
nTPM: 33.7
2338 Male, age 61, both hemispheres 38.4
2334 Male, age 80, both hemispheres 34.7
1921 Female, age 85, both hemispheres 27.9
Periaquaductal grey, anterior
nTPM: 29.3
1795 Male, age 51, unknown 31.8
1947 Male, age 18, unknown 30.4
2502 Female, age 75, unknown 25.9
Periaquaductal grey, dorsal
nTPM: 37.5
2850 Male, age 76, both hemispheres 52.2
1831 Male, age 72, unknown 40.8
1840 Male, age 53, unknown 33.1
2464 Female, age 72, unknown 23.7
Periaquaductal grey, lateral
nTPM: 32.6
2053 Male, age 18, unknown 33.7
2272 Male, age 74, both hemispheres 32.1
2140 Male, age 76, both hemispheres 31.8
Pretectal area
nTPM: 37.5
2407 Male, age 75, both hemispheres 50.5
1817 Female, age 42, unknown 46.5
2667 Female, age 75, unknown 45.6
2825 Male, age 18, unknown 42.8
1815 Male, age 53, unknown 41.7
1816 Male, age 51, unknown 39.1
1944 Female, age 72, unknown 37.1
2007 Male, age 72, unknown 33.0
2224 Female, age 72, unknown 27.3
2316 Male, age 76, right hemisphere 25.7
2273 Male, age 74, both hemispheres 23.0
Red nucleus
nTPM: 38.2
2823 Male, age 76, right hemisphere 55.3
2584 Male, age 75, left hemisphere 48.9
2588 Male, age 74, left hemisphere 40.6
2769 Male, age 72, unknown 39.6
2725 Female, age 75, unknown 39.1
1865 Male, age 51, unknown 36.4
1821 Female, age 72, unknown 35.9
2227 Male, age 72, unknown 34.1
2785 Male, age 18, unknown 33.7
1904 Male, age 53, unknown 32.5
2503 Female, age 72, unknown 31.3
1954 Female, age 42, unknown 31.0
Substantia nigra
nTPM: 33.2
2665 Male, age 74, both hemispheres 51.5
2699 Male, age 18, unknown 49.0
2583 Male, age 75, right hemisphere 48.1
2590 Female, age 75, unknown 32.8
1889 Female, age 72, unknown 31.7
1941 Male, age 53, unknown 30.1
1916 Female, age 42, unknown 30.0
1851 Male, age 51, unknown 29.9
2409 Female, age 72, unknown 16.0
2241 Male, age 72, unknown 12.7
Superior colliculus
nTPM: 37.8
2664 Male, age 75, both hemispheres 55.2
1913 Female, age 42, unknown 44.1
1995 Male, age 72, unknown 43.6
1839 Male, age 51, unknown 40.2
2587 Male, age 74, left hemisphere 39.2
1895 Male, age 76, right hemisphere 33.4
1796 Male, age 53, unknown 32.7
2087 Female, age 72, unknown 31.6
2668 Female, age 75, unknown 31.3
2261 Male, age 18, unknown 27.1
Ventral tegmental area
nTPM: 30.8
2223 Female, age 72, unknown 37.7
2218 Male, age 76, both hemispheres 36.2
2021 Male, age 53, unknown 32.6
1915 Female, age 42, unknown 28.1
1942 Male, age 51, unknown 26.2
2410 Female, age 72, unknown 24.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 63.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 63.0
Samples: 139

Max nTPM: 98.5
Min nTPM: 39.3
Std nTPM: 11.9
Median nTPM: 60.0
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 98.5
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 96.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 95.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 87.9
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 87.0
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 86.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 85.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 83.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 83.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 83.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 82.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 205.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 205.7
FF:10158-103A5 76 years, female 205.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 59.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 59.2
Samples: 4

Max nTPM: 62.2
Min nTPM: 56.7
Sample A Male 56.7
Sample B Male 58.6
Sample C Female 62.2
Sample D Female 59.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.2
68668024 Antisense, RP_050203_01_C07, Mouse strain C57BL/6J (56 days, male) 11.6
70813251 Antisense, RP_050712_03_E03, Mouse strain C57BL/6J (56 days, male) 0.8

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