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PAFAH1B2
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:42.2 nTPM
HPA:42.2 nTPM
GTEx:28.3 nTPM
FANTOM5:193.2 Scaled Tags Per Million
Pig:98.1 nTPM
Mouse:130.5 nTPM
Allen mouse:3.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA051836
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 42.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 30.1
2288 Male, age 75, left hemisphere 34.9
2481 Female, age 94, left hemisphere 33.1
2846 Female, age 79, unknown 30.9
1781 Male, age 74, unknown 30.8
2290 Female, age 72, unknown 30.2
1854 Male, age 80, left hemisphere 28.8
1857 Female, age 85, left hemisphere 28.8
2289 Male, age 61, right hemisphere 23.5
Claustrum
nTPM: 32.3
2392 Female, age 94, both hemispheres 36.7
2491 Male, age 75, both hemispheres 35.4
2198 Male, age 80, both hemispheres 33.7
1956 Male, age 74, unknown 33.1
2292 Female, age 85, both hemispheres 32.7
2196 Female, age 79, unknown 31.1
2284 Female, age 91, both hemispheres 30.8
2568 Male, age 61, both hemispheres 30.2
2645 Female, age 72, unknown 26.4
Globus pallidus, externus
nTPM: 39.4
2395 Male, age 75, both hemispheres 45.8
2772 Female, age 79, unknown 43.8
1996 Male, age 80, right hemisphere 39.8
2567 Female, age 72, unknown 34.3
2646 Male, age 61, right hemisphere 33.2
Globus pallidus, internus
nTPM: 42.2
2287 Male, age 75, right hemisphere 52.8
2778 Female, age 91, both hemispheres 46.1
2111 Female, age 85, right hemisphere 43.8
2483 Female, age 94, right hemisphere 43.1
1818 Male, age 74, unknown 39.3
2566 Female, age 72, unknown 36.1
2037 Male, age 80, right hemisphere 34.1
Nucleus accumbens
nTPM: 31.5
2286 Male, age 75, left hemisphere 35.7
2391 Female, age 94, left hemisphere 35.5
2698 Female, age 72, unknown 32.4
1783 Male, age 74, unknown 31.2
1856 Female, age 91, right hemisphere 29.8
2824 Male, age 61, right hemisphere 29.7
1806 Female, age 85, left hemisphere 29.4
2732 Male, age 80, right hemisphere 28.4
Nucleus basalis of Meynert
nTPM: 32.3
2569 Male, age 61, both hemispheres 35.3
2821 Male, age 75, both hemispheres 32.4
2484 Female, age 94, left hemisphere 31.4
2393 Male, age 80, right hemisphere 30.2
Nucleus of the diagonal band
nTPM: 34.4
2775 Male, age 80, right hemisphere 37.3
1812 Female, age 91, both hemispheres 36.9
2029 Male, age 61, right hemisphere 34.6
2195 Female, age 85, both hemispheres 32.3
1979 Male, age 74, unknown 30.8
Olfactory tubercle
nTPM: 33.2
1846 Male, age 80, right hemisphere 35.9
1998 Female, age 91, both hemispheres 34.0
2487 Female, age 94, left hemisphere 31.8
2856 Male, age 75, right hemisphere 31.0
Putamen
nTPM: 30.8
2647 Male, age 75, left hemisphere 34.2
2482 Female, age 94, left hemisphere 33.1
2466 Female, age 79, unknown 31.3
1937 Female, age 91, right hemisphere 30.4
1838 Male, age 80, right hemisphere 30.3
1829 Male, age 74, unknown 30.2
2489 Female, age 72, unknown 26.3
Septal nuclei
nTPM: 32.3
2031 Female, age 72, unknown 38.7
2394 Male, age 61, left hemisphere 35.3
1960 Male, age 74, unknown 32.8
2009 Female, age 91, both hemispheres 32.0
2199 Male, age 80, right hemisphere 30.5
2629 Female, age 94, right hemisphere 30.0
2059 Female, age 85, both hemispheres 27.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 28.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 26.2
Samples: 246

Max nTPM: 47.7
Min nTPM: 18.7
Std nTPM: 3.4
Median nTPM: 25.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 47.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 40.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 37.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 37.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 35.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 34.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 33.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 33.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 33.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 32.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 32.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 27.1
Samples: 246

Max nTPM: 42.0
Min nTPM: 18.4
Std nTPM: 3.9
Median nTPM: 26.6
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 42.0
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 41.4
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 40.6
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 40.3
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 37.6
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 37.1
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 37.0
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 36.6
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 36.4
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 35.3
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 34.8
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Brain - Putamen (basal ganglia)
Average nTPM: 28.3
Samples: 205

Max nTPM: 47.1
Min nTPM: 20.8
Std nTPM: 3.5
Median nTPM: 28.1
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 47.1
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 40.4
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 38.3
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 37.4
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 37.4
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 37.2
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 36.1
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 35.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 35.3
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 34.5
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 34.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 193.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 133.3
FF:10164-103B2 76 years, female 133.3
Globus pallidus
Scaled Tags Per Million: 193.2
FF:10175-103C4 60 years, female 243.1
FF:10161-103A8 76 years, female 143.4
Nucleus accumbens
Scaled Tags Per Million: 144.6
FF:10037-101F1 23-56 years, mixed 144.6
Putamen
Scaled Tags Per Million: 137.5
FF:10176-103C5 60 years, female 137.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 98.1
Pig sample Sample description nTPM
Caudate
nTPM: 74.7
Samples: 4

Max nTPM: 80.4
Min nTPM: 67.2
Sample A Female 75.7
Sample B Female 67.2
Sample C Male 80.4
Sample D Male 75.6
Putamen
nTPM: 98.1
Samples: 4

Max nTPM: 144.6
Min nTPM: 76.7
Sample A Female 85.6
Sample B Female 76.7
Sample C Male 144.6
Sample D Male 85.4
Septum
nTPM: 86.3
Samples: 4

Max nTPM: 109.7
Min nTPM: 71.4
Sample A Female 89.4
Sample B Female 74.8
Sample C Male 109.7
Sample D Male 71.4
Ventral pallidum
nTPM: 82.5
Samples: 4

Max nTPM: 96.6
Min nTPM: 75.3
Sample A Female 79.1
Sample B Female 79.1
Sample C Male 96.6
Sample D Male 75.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 130.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 102.0
Samples: 4

Max nTPM: 104.6
Min nTPM: 100.2
Sample A Male 102.2
Sample B Male 104.6
Sample C Female 101.0
Sample D Female 100.2
Septum
nTPM: 130.5
Samples: 4

Max nTPM: 143.6
Min nTPM: 123.2
Sample A Male 126.3
Sample B Male 143.6
Sample C Female 123.2
Sample D Female 128.7
Ventral forebrain
nTPM: 106.7
Samples: 4

Max nTPM: 119.7
Min nTPM: 96.7
Sample A Male 96.7
Sample B Male 119.7
Sample C Female 108.5
Sample D Female 101.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.7
68076554 Antisense, RP_040923_02_G03, Mouse strain C57BL/6J (56 days, male) 4.5
70812942 Antisense, RP_050712_02_H02, Mouse strain C57BL/6J (56 days, male) 0.8
Pallidum
Expression energy: 3.1
68076554 Antisense, RP_040923_02_G03, Mouse strain C57BL/6J (56 days, male) 5.9
70812942 Antisense, RP_050712_02_H02, Mouse strain C57BL/6J (56 days, male) 0.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.