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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:131.3 nTPM
HPA:131.3 nTPM
GTEx:80.1 nTPM
FANTOM5:383.1 Scaled Tags Per Million
Pig:29.0 nTPM
Mouse:34.5 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 131.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 100.1
1830 Male, age 51, unknown 135.9
2411 Female, age 72, unknown 131.5
1833 Male, age 53, unknown 126.2
2019 Male, age 18, unknown 116.3
1870 Female, age 42, unknown 101.1
2666 Male, age 74, left hemisphere 94.1
2828 Female, age 72, unknown 81.2
2219 Male, age 76, both hemispheres 80.4
1827 Male, age 72, unknown 72.7
2586 Male, age 75, left hemisphere 61.2
Dorsal raphe nucleus
nTPM: 75.5
2750 Male, age 76, both hemispheres 146.4
2016 Female, age 72, unknown 71.8
1828 Male, age 53, unknown 70.0
2047 Male, age 72, unknown 52.6
2298 Female, age 72, unknown 36.5
Inferior colliculus
nTPM: 69.3
1890 Male, age 53, unknown 77.0
2849 Male, age 72, unknown 75.1
1848 Female, age 42, unknown 69.9
2097 Female, age 72, unknown 55.2
Median raphe nucleus
nTPM: 70.2
2220 Male, age 76, midline 70.2
Pedunculopontine tegmental nucleus
nTPM: 96.4
2334 Male, age 80, both hemispheres 105.5
2338 Male, age 61, both hemispheres 94.4
1921 Female, age 85, both hemispheres 89.4
Periaquaductal grey, anterior
nTPM: 55.1
1947 Male, age 18, unknown 65.8
2502 Female, age 75, unknown 51.1
1795 Male, age 51, unknown 48.4
Periaquaductal grey, dorsal
nTPM: 52.6
2464 Female, age 72, unknown 90.7
1831 Male, age 72, unknown 55.2
1840 Male, age 53, unknown 33.2
2850 Male, age 76, both hemispheres 31.3
Periaquaductal grey, lateral
nTPM: 53.4
2053 Male, age 18, unknown 63.5
2272 Male, age 74, both hemispheres 62.7
2140 Male, age 76, both hemispheres 34.2
Pretectal area
nTPM: 69.1
2316 Male, age 76, right hemisphere 104.9
1815 Male, age 53, unknown 90.4
2407 Male, age 75, both hemispheres 78.0
2667 Female, age 75, unknown 73.5
2007 Male, age 72, unknown 71.3
1817 Female, age 42, unknown 71.1
2825 Male, age 18, unknown 63.3
2224 Female, age 72, unknown 55.3
2273 Male, age 74, both hemispheres 53.7
1944 Female, age 72, unknown 52.9
1816 Male, age 51, unknown 45.3
Red nucleus
nTPM: 131.3
2823 Male, age 76, right hemisphere 198.0
1865 Male, age 51, unknown 153.3
2503 Female, age 72, unknown 146.5
1904 Male, age 53, unknown 141.4
1821 Female, age 72, unknown 135.1
2769 Male, age 72, unknown 131.6
2785 Male, age 18, unknown 128.6
2227 Male, age 72, unknown 125.0
2588 Male, age 74, left hemisphere 124.9
1954 Female, age 42, unknown 109.2
2725 Female, age 75, unknown 91.9
2584 Male, age 75, left hemisphere 90.4
Substantia nigra
nTPM: 78.3
2409 Female, age 72, unknown 116.6
2583 Male, age 75, right hemisphere 91.7
2590 Female, age 75, unknown 89.9
1889 Female, age 72, unknown 82.8
1851 Male, age 51, unknown 80.3
2699 Male, age 18, unknown 75.0
1941 Male, age 53, unknown 74.9
2241 Male, age 72, unknown 73.3
1916 Female, age 42, unknown 52.2
2665 Male, age 74, both hemispheres 46.6
Superior colliculus
nTPM: 87.3
1913 Female, age 42, unknown 138.5
1895 Male, age 76, right hemisphere 124.9
1995 Male, age 72, unknown 109.2
2587 Male, age 74, left hemisphere 96.8
2668 Female, age 75, unknown 94.8
1839 Male, age 51, unknown 86.2
1796 Male, age 53, unknown 61.9
2087 Female, age 72, unknown 60.4
2664 Male, age 75, both hemispheres 50.4
2261 Male, age 18, unknown 49.4
Ventral tegmental area
nTPM: 83.4
2410 Female, age 72, unknown 111.3
2223 Female, age 72, unknown 107.7
2218 Male, age 76, both hemispheres 75.9
1942 Male, age 51, unknown 73.1
2021 Male, age 53, unknown 70.2
1915 Female, age 42, unknown 62.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 80.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 80.1
Samples: 139

Max nTPM: 260.7
Min nTPM: 18.9
Std nTPM: 45.4
Median nTPM: 67.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 260.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 226.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 211.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 203.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 199.7
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 179.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 179.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 175.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 175.0
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 173.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 171.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 383.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 383.1
FF:10158-103A5 76 years, female 383.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 29.0
Pig sample Sample description nTPM
Midbrain
nTPM: 29.1
Samples: 4

Max nTPM: 33.1
Min nTPM: 25.1
Sample A Female 25.1
Sample B Female 30.8
Sample C Male 33.1
Sample D Male 27.2
Periaqueductal gray
nTPM: 25.9
Samples: 3

Max nTPM: 28.0
Min nTPM: 24.4
Sample B Female 28.0
Sample C Male 24.4
Sample D Male 25.3
Substantia nigra
nTPM: 28.8
Samples: 4

Max nTPM: 39.6
Min nTPM: 23.6
Sample A Female 23.6
Sample B Female 24.0
Sample C Male 27.8
Sample D Male 39.6
Superior colliculi
nTPM: 25.7
Samples: 4

Max nTPM: 31.0
Min nTPM: 18.3
Sample A Female 22.9
Sample B Female 18.3
Sample C Male 30.4
Sample D Male 31.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 34.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 34.5
Samples: 4

Max nTPM: 35.9
Min nTPM: 32.5
Sample A Male 32.5
Sample B Male 34.4
Sample C Female 35.9
Sample D Female 35.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71487172 Antisense, RP_050913_01_D04, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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