ABOUTMENU
HELP
NEWS
PCMTD1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.2 nTPM
HPA:19.2 nTPM
GTEx:18.7 nTPM
FANTOM5:97.7 Scaled Tags Per Million
Pig:46.3 nTPM
Mouse:34.2 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 19.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.8
2219 Male, age 76, both hemispheres 19.0
2019 Male, age 18, unknown 18.7
2411 Female, age 72, unknown 18.6
1830 Male, age 51, unknown 18.4
1833 Male, age 53, unknown 17.9
1870 Female, age 42, unknown 17.9
1827 Male, age 72, unknown 17.3
2586 Male, age 75, left hemisphere 17.3
2666 Male, age 74, left hemisphere 17.2
2828 Female, age 72, unknown 15.5
Dorsal raphe nucleus
nTPM: 17.9
2016 Female, age 72, unknown 18.2
2047 Male, age 72, unknown 18.1
2750 Male, age 76, both hemispheres 18.1
1828 Male, age 53, unknown 18.0
2298 Female, age 72, unknown 16.9
Inferior colliculus
nTPM: 19.0
2097 Female, age 72, unknown 21.4
1890 Male, age 53, unknown 20.4
1848 Female, age 42, unknown 17.9
2849 Male, age 72, unknown 16.2
Median raphe nucleus
nTPM: 18.3
2220 Male, age 76, midline 18.3
Pedunculopontine tegmental nucleus
nTPM: 17.5
1921 Female, age 85, both hemispheres 18.3
2334 Male, age 80, both hemispheres 17.8
2338 Male, age 61, both hemispheres 16.5
Periaquaductal grey, anterior
nTPM: 18.3
2502 Female, age 75, unknown 19.7
1947 Male, age 18, unknown 19.5
1795 Male, age 51, unknown 15.6
Periaquaductal grey, dorsal
nTPM: 18.1
1831 Male, age 72, unknown 19.2
2464 Female, age 72, unknown 19.1
1840 Male, age 53, unknown 17.8
2850 Male, age 76, both hemispheres 16.2
Periaquaductal grey, lateral
nTPM: 16.2
2053 Male, age 18, unknown 17.0
2272 Male, age 74, both hemispheres 16.3
2140 Male, age 76, both hemispheres 15.2
Pretectal area
nTPM: 17.6
1944 Female, age 72, unknown 19.2
1816 Male, age 51, unknown 18.6
2007 Male, age 72, unknown 18.6
1817 Female, age 42, unknown 18.4
1815 Male, age 53, unknown 18.1
2273 Male, age 74, both hemispheres 17.6
2224 Female, age 72, unknown 16.9
2407 Male, age 75, both hemispheres 16.8
2825 Male, age 18, unknown 16.8
2667 Female, age 75, unknown 16.7
2316 Male, age 76, right hemisphere 15.5
Red nucleus
nTPM: 18.1
1821 Female, age 72, unknown 21.3
1954 Female, age 42, unknown 20.2
1904 Male, age 53, unknown 19.2
2503 Female, age 72, unknown 19.1
1865 Male, age 51, unknown 18.4
2227 Male, age 72, unknown 17.6
2769 Male, age 72, unknown 17.5
2584 Male, age 75, left hemisphere 17.2
2725 Female, age 75, unknown 17.2
2823 Male, age 76, right hemisphere 17.1
2785 Male, age 18, unknown 16.9
2588 Male, age 74, left hemisphere 15.9
Substantia nigra
nTPM: 19.2
2241 Male, age 72, unknown 22.4
1941 Male, age 53, unknown 20.5
2409 Female, age 72, unknown 19.9
1889 Female, age 72, unknown 19.8
1851 Male, age 51, unknown 18.8
2665 Male, age 74, both hemispheres 18.7
1916 Female, age 42, unknown 18.2
2583 Male, age 75, right hemisphere 18.2
2699 Male, age 18, unknown 18.0
2590 Female, age 75, unknown 17.5
Superior colliculus
nTPM: 17.5
2668 Female, age 75, unknown 19.3
1895 Male, age 76, right hemisphere 18.5
2087 Female, age 72, unknown 18.5
2664 Male, age 75, both hemispheres 18.3
1839 Male, age 51, unknown 17.3
1913 Female, age 42, unknown 17.2
2261 Male, age 18, unknown 17.2
2587 Male, age 74, left hemisphere 17.1
1995 Male, age 72, unknown 16.5
1796 Male, age 53, unknown 14.7
Ventral tegmental area
nTPM: 17.6
1942 Male, age 51, unknown 18.8
1915 Female, age 42, unknown 17.9
2410 Female, age 72, unknown 17.8
2223 Female, age 72, unknown 17.5
2218 Male, age 76, both hemispheres 17.3
2021 Male, age 53, unknown 16.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 18.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.7
Samples: 139

Max nTPM: 27.1
Min nTPM: 10.5
Std nTPM: 3.2
Median nTPM: 18.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 27.1
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 26.1
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 25.8
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 25.6
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 25.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 25.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 24.6
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 23.7
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 23.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 23.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 23.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 97.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 97.7
FF:10158-103A5 76 years, female 97.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 46.3
Pig sample Sample description nTPM
Midbrain
nTPM: 44.3
Samples: 4

Max nTPM: 50.7
Min nTPM: 39.7
Sample A Female 46.9
Sample B Female 39.9
Sample C Male 50.7
Sample D Male 39.7
Periaqueductal gray
nTPM: 35.3
Samples: 3

Max nTPM: 37.0
Min nTPM: 32.2
Sample B Female 36.6
Sample C Male 37.0
Sample D Male 32.2
Substantia nigra
nTPM: 43.0
Samples: 4

Max nTPM: 47.1
Min nTPM: 40.3
Sample A Female 47.1
Sample B Female 41.1
Sample C Male 43.6
Sample D Male 40.3
Superior colliculi
nTPM: 46.3
Samples: 4

Max nTPM: 51.8
Min nTPM: 40.8
Sample A Female 49.2
Sample B Female 43.2
Sample C Male 51.8
Sample D Male 40.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 34.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 34.2
Samples: 4

Max nTPM: 38.7
Min nTPM: 29.6
Sample A Male 29.6
Sample B Male 35.8
Sample C Female 38.7
Sample D Female 32.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
68743859 Antisense, RP_050203_01_G04, Mouse strain C57BL/6J (56 days, male) 1.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.