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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.8 nTPM
HPA:31.8 nTPM
GTEx:25.4 nTPM
FANTOM5:10.5 Scaled Tags Per Million
Pig:11.2 nTPM
Mouse:13.1 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 31.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 10.0
2828 Female, age 72, unknown 14.3
2219 Male, age 76, both hemispheres 12.4
1833 Male, age 53, unknown 11.8
2586 Male, age 75, left hemisphere 11.1
2411 Female, age 72, unknown 9.6
2666 Male, age 74, left hemisphere 9.1
1830 Male, age 51, unknown 9.0
1870 Female, age 42, unknown 8.8
1827 Male, age 72, unknown 8.7
2019 Male, age 18, unknown 5.2
Dorsal raphe nucleus
nTPM: 17.2
2047 Male, age 72, unknown 20.2
1828 Male, age 53, unknown 17.8
2750 Male, age 76, both hemispheres 17.5
2298 Female, age 72, unknown 16.2
2016 Female, age 72, unknown 14.1
Inferior colliculus
nTPM: 9.7
1890 Male, age 53, unknown 11.0
2849 Male, age 72, unknown 10.2
2097 Female, age 72, unknown 9.2
1848 Female, age 42, unknown 8.4
Median raphe nucleus
nTPM: 17.8
2220 Male, age 76, midline 17.8
Pedunculopontine tegmental nucleus
nTPM: 6.2
1921 Female, age 85, both hemispheres 8.6
2338 Male, age 61, both hemispheres 5.5
2334 Male, age 80, both hemispheres 4.3
Periaquaductal grey, anterior
nTPM: 9.0
1947 Male, age 18, unknown 10.6
1795 Male, age 51, unknown 9.2
2502 Female, age 75, unknown 7.3
Periaquaductal grey, dorsal
nTPM: 11.1
1840 Male, age 53, unknown 14.9
2850 Male, age 76, both hemispheres 13.1
1831 Male, age 72, unknown 8.5
2464 Female, age 72, unknown 8.0
Periaquaductal grey, lateral
nTPM: 10.9
2140 Male, age 76, both hemispheres 13.7
2053 Male, age 18, unknown 11.4
2272 Male, age 74, both hemispheres 7.5
Pretectal area
nTPM: 8.4
2273 Male, age 74, both hemispheres 12.3
2316 Male, age 76, right hemisphere 12.3
2825 Male, age 18, unknown 11.1
2407 Male, age 75, both hemispheres 10.7
1815 Male, age 53, unknown 8.7
2224 Female, age 72, unknown 8.6
1944 Female, age 72, unknown 7.3
2667 Female, age 75, unknown 6.7
1816 Male, age 51, unknown 5.2
2007 Male, age 72, unknown 5.1
1817 Female, age 42, unknown 4.7
Red nucleus
nTPM: 9.8
2725 Female, age 75, unknown 22.0
1821 Female, age 72, unknown 12.2
2503 Female, age 72, unknown 10.3
1904 Male, age 53, unknown 10.2
1865 Male, age 51, unknown 8.7
2588 Male, age 74, left hemisphere 8.7
2823 Male, age 76, right hemisphere 8.7
2769 Male, age 72, unknown 8.5
2227 Male, age 72, unknown 7.8
1954 Female, age 42, unknown 7.6
2584 Male, age 75, left hemisphere 7.0
2785 Male, age 18, unknown 5.8
Substantia nigra
nTPM: 31.8
1916 Female, age 42, unknown 105.9
2241 Male, age 72, unknown 52.4
1851 Male, age 51, unknown 42.5
2699 Male, age 18, unknown 40.6
2409 Female, age 72, unknown 24.7
2590 Female, age 75, unknown 12.9
1889 Female, age 72, unknown 11.9
2665 Male, age 74, both hemispheres 10.6
2583 Male, age 75, right hemisphere 9.3
1941 Male, age 53, unknown 7.3
Superior colliculus
nTPM: 8.7
1796 Male, age 53, unknown 11.2
2664 Male, age 75, both hemispheres 11.1
1995 Male, age 72, unknown 9.6
2261 Male, age 18, unknown 9.1
2587 Male, age 74, left hemisphere 8.5
2668 Female, age 75, unknown 8.5
1839 Male, age 51, unknown 8.3
2087 Female, age 72, unknown 7.4
1913 Female, age 42, unknown 7.2
1895 Male, age 76, right hemisphere 6.3
Ventral tegmental area
nTPM: 18.3
1915 Female, age 42, unknown 38.1
2410 Female, age 72, unknown 20.0
1942 Male, age 51, unknown 16.5
2223 Female, age 72, unknown 12.9
2021 Male, age 53, unknown 12.6
2218 Male, age 76, both hemispheres 9.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.4
Samples: 139

Max nTPM: 141.8
Min nTPM: 1.6
Std nTPM: 22.9
Median nTPM: 17.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 141.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 141.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 81.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 79.0
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 78.4
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 73.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 69.7
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 67.4
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 60.7
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 59.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 59.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 10.5
FF:10158-103A5 76 years, female 10.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 11.2
Pig sample Sample description nTPM
Midbrain
nTPM: 10.4
Samples: 4

Max nTPM: 19.4
Min nTPM: 2.7
Sample A Female 2.7
Sample B Female 9.0
Sample C Male 19.4
Sample D Male 10.3
Periaqueductal gray
nTPM: 9.8
Samples: 3

Max nTPM: 11.4
Min nTPM: 8.2
Sample B Female 8.2
Sample C Male 11.4
Sample D Male 9.8
Substantia nigra
nTPM: 11.2
Samples: 4

Max nTPM: 19.3
Min nTPM: 5.2
Sample A Female 11.9
Sample B Female 8.3
Sample C Male 19.3
Sample D Male 5.2
Superior colliculi
nTPM: 6.4
Samples: 4

Max nTPM: 7.6
Min nTPM: 4.9
Sample A Female 4.9
Sample B Female 5.8
Sample C Male 7.6
Sample D Male 7.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.1
Samples: 4

Max nTPM: 14.5
Min nTPM: 12.2
Sample A Male 12.2
Sample B Male 13.3
Sample C Female 14.5
Sample D Female 12.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
71670677 Antisense, RP_050505_02_H02, Mouse strain C57BL/6J (56 days, male) 0.8
69782366 Antisense, RP_050505_02_H02, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.