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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:61.7 nTPM
HPA:61.7 nTPM
GTEx:76.2 nTPM
FANTOM5:72.4 Scaled Tags Per Million
Pig:130.5 nTPM
Mouse:279.1 nTPM
Allen mouse:3.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 61.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.2
2019 Male, age 18, unknown 65.1
2411 Female, age 72, unknown 62.8
1870 Female, age 42, unknown 60.1
1827 Male, age 72, unknown 59.9
2828 Female, age 72, unknown 59.5
2586 Male, age 75, left hemisphere 59.0
1830 Male, age 51, unknown 57.3
1833 Male, age 53, unknown 56.8
2219 Male, age 76, both hemispheres 56.2
2666 Male, age 74, left hemisphere 55.1
Dorsal raphe nucleus
nTPM: 61.2
2298 Female, age 72, unknown 63.5
2047 Male, age 72, unknown 61.6
1828 Male, age 53, unknown 60.9
2750 Male, age 76, both hemispheres 60.9
2016 Female, age 72, unknown 59.2
Inferior colliculus
nTPM: 60.0
2097 Female, age 72, unknown 60.9
1848 Female, age 42, unknown 60.7
1890 Male, age 53, unknown 59.4
2849 Male, age 72, unknown 58.8
Median raphe nucleus
nTPM: 60.5
2220 Male, age 76, midline 60.5
Pedunculopontine tegmental nucleus
nTPM: 59.7
1921 Female, age 85, both hemispheres 61.7
2334 Male, age 80, both hemispheres 61.5
2338 Male, age 61, both hemispheres 55.8
Periaquaductal grey, anterior
nTPM: 58.2
2502 Female, age 75, unknown 59.0
1947 Male, age 18, unknown 58.1
1795 Male, age 51, unknown 57.5
Periaquaductal grey, dorsal
nTPM: 58.7
2850 Male, age 76, both hemispheres 62.4
1840 Male, age 53, unknown 59.4
1831 Male, age 72, unknown 57.1
2464 Female, age 72, unknown 55.8
Periaquaductal grey, lateral
nTPM: 59.8
2272 Male, age 74, both hemispheres 61.6
2140 Male, age 76, both hemispheres 58.9
2053 Male, age 18, unknown 58.8
Pretectal area
nTPM: 61.7
2007 Male, age 72, unknown 65.1
2273 Male, age 74, both hemispheres 64.5
1815 Male, age 53, unknown 63.8
1817 Female, age 42, unknown 63.8
1944 Female, age 72, unknown 63.0
2667 Female, age 75, unknown 62.2
2224 Female, age 72, unknown 61.3
2407 Male, age 75, both hemispheres 61.1
1816 Male, age 51, unknown 60.7
2316 Male, age 76, right hemisphere 58.2
2825 Male, age 18, unknown 55.1
Red nucleus
nTPM: 60.8
1865 Male, age 51, unknown 64.4
1821 Female, age 72, unknown 63.1
2785 Male, age 18, unknown 63.1
2769 Male, age 72, unknown 62.0
1954 Female, age 42, unknown 61.8
2503 Female, age 72, unknown 61.7
1904 Male, age 53, unknown 61.2
2588 Male, age 74, left hemisphere 60.6
2725 Female, age 75, unknown 59.5
2227 Male, age 72, unknown 59.4
2823 Male, age 76, right hemisphere 56.9
2584 Male, age 75, left hemisphere 55.7
Substantia nigra
nTPM: 60.2
1916 Female, age 42, unknown 64.5
1851 Male, age 51, unknown 62.7
1889 Female, age 72, unknown 62.7
2590 Female, age 75, unknown 62.0
1941 Male, age 53, unknown 60.3
2409 Female, age 72, unknown 59.4
2699 Male, age 18, unknown 59.0
2583 Male, age 75, right hemisphere 58.2
2241 Male, age 72, unknown 57.2
2665 Male, age 74, both hemispheres 56.1
Superior colliculus
nTPM: 59.9
2587 Male, age 74, left hemisphere 63.3
2087 Female, age 72, unknown 61.5
1995 Male, age 72, unknown 61.1
2261 Male, age 18, unknown 60.9
1839 Male, age 51, unknown 60.6
1796 Male, age 53, unknown 60.1
1913 Female, age 42, unknown 59.5
2668 Female, age 75, unknown 57.9
1895 Male, age 76, right hemisphere 57.7
2664 Male, age 75, both hemispheres 56.8
Ventral tegmental area
nTPM: 60.9
2410 Female, age 72, unknown 63.7
2218 Male, age 76, both hemispheres 62.0
1915 Female, age 42, unknown 61.2
2223 Female, age 72, unknown 60.5
2021 Male, age 53, unknown 60.2
1942 Male, age 51, unknown 57.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 76.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 76.2
Samples: 139

Max nTPM: 120.3
Min nTPM: 50.1
Std nTPM: 12.9
Median nTPM: 73.4
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 120.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 109.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 109.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 108.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 107.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 104.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 102.3
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 101.2
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 99.4
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 99.3
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 95.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 72.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 72.4
FF:10158-103A5 76 years, female 72.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 130.5
Pig sample Sample description nTPM
Midbrain
nTPM: 127.6
Samples: 4

Max nTPM: 141.7
Min nTPM: 117.8
Sample A Female 126.0
Sample B Female 117.8
Sample C Male 141.7
Sample D Male 124.8
Periaqueductal gray
nTPM: 101.9
Samples: 3

Max nTPM: 106.9
Min nTPM: 95.6
Sample B Female 103.2
Sample C Male 106.9
Sample D Male 95.6
Substantia nigra
nTPM: 106.4
Samples: 4

Max nTPM: 133.6
Min nTPM: 91.1
Sample A Female 133.6
Sample B Female 95.7
Sample C Male 105.0
Sample D Male 91.1
Superior colliculi
nTPM: 130.5
Samples: 4

Max nTPM: 156.9
Min nTPM: 96.7
Sample A Female 145.7
Sample B Female 96.7
Sample C Male 156.9
Sample D Male 122.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 279.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 279.1
Samples: 4

Max nTPM: 287.4
Min nTPM: 269.2
Sample A Male 283.4
Sample B Male 276.5
Sample C Female 269.2
Sample D Female 287.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.2
71486943 Antisense, RP_050913_01_A04, Mouse strain C57BL/6J (56 days, male) 3.2

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The Human Protein Atlas project is funded
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