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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:72.1 nTPM
HPA:72.1 nTPM
GTEx:20.2 nTPM
FANTOM5:97.3 Scaled Tags Per Million
Pig:87.1 nTPM
Mouse:78.9 nTPM
Allen mouse:2.4 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 72.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 52.5
2288 Male, age 75, left hemisphere 66.2
1781 Male, age 74, unknown 57.0
2846 Female, age 79, unknown 53.4
2290 Female, age 72, unknown 52.1
1854 Male, age 80, left hemisphere 51.2
2481 Female, age 94, left hemisphere 48.3
2289 Male, age 61, right hemisphere 46.3
1857 Female, age 85, left hemisphere 45.7
Claustrum
nTPM: 65.5
1956 Male, age 74, unknown 83.0
2198 Male, age 80, both hemispheres 72.2
2392 Female, age 94, both hemispheres 65.3
2196 Female, age 79, unknown 64.0
2568 Male, age 61, both hemispheres 64.0
2292 Female, age 85, both hemispheres 61.0
2491 Male, age 75, both hemispheres 60.7
2284 Female, age 91, both hemispheres 60.2
2645 Female, age 72, unknown 59.5
Globus pallidus, externus
nTPM: 60.7
2772 Female, age 79, unknown 70.0
1996 Male, age 80, right hemisphere 69.9
2395 Male, age 75, both hemispheres 64.7
2567 Female, age 72, unknown 50.3
2646 Male, age 61, right hemisphere 48.9
Globus pallidus, internus
nTPM: 68.8
2287 Male, age 75, right hemisphere 100.8
2778 Female, age 91, both hemispheres 77.8
2111 Female, age 85, right hemisphere 73.0
1818 Male, age 74, unknown 62.5
2566 Female, age 72, unknown 57.7
2037 Male, age 80, right hemisphere 56.2
2483 Female, age 94, right hemisphere 53.9
Nucleus accumbens
nTPM: 50.6
2286 Male, age 75, left hemisphere 66.7
2391 Female, age 94, left hemisphere 57.4
1783 Male, age 74, unknown 52.0
1806 Female, age 85, left hemisphere 49.5
2698 Female, age 72, unknown 49.4
2824 Male, age 61, right hemisphere 47.7
2732 Male, age 80, right hemisphere 41.1
1856 Female, age 91, right hemisphere 41.0
Nucleus basalis of Meynert
nTPM: 46.6
2821 Male, age 75, both hemispheres 50.9
2569 Male, age 61, both hemispheres 48.5
2484 Female, age 94, left hemisphere 46.8
2393 Male, age 80, right hemisphere 40.1
Nucleus of the diagonal band
nTPM: 72.1
2029 Male, age 61, right hemisphere 92.8
2775 Male, age 80, right hemisphere 85.1
2195 Female, age 85, both hemispheres 77.2
1812 Female, age 91, both hemispheres 75.2
1979 Male, age 74, unknown 30.4
Olfactory tubercle
nTPM: 71.7
1846 Male, age 80, right hemisphere 78.0
2487 Female, age 94, left hemisphere 77.9
1998 Female, age 91, both hemispheres 73.8
2856 Male, age 75, right hemisphere 57.2
Putamen
nTPM: 49.5
2482 Female, age 94, left hemisphere 55.5
1829 Male, age 74, unknown 53.7
2466 Female, age 79, unknown 51.6
1937 Female, age 91, right hemisphere 48.9
2647 Male, age 75, left hemisphere 48.9
2489 Female, age 72, unknown 44.3
1838 Male, age 80, right hemisphere 43.4
Septal nuclei
nTPM: 65.7
1960 Male, age 74, unknown 106.6
2031 Female, age 72, unknown 92.9
2629 Female, age 94, right hemisphere 66.3
2009 Female, age 91, both hemispheres 61.2
2059 Female, age 85, both hemispheres 56.5
2394 Male, age 61, left hemisphere 43.8
2199 Male, age 80, right hemisphere 32.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 20.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 20.2
Samples: 246

Max nTPM: 97.5
Min nTPM: 6.2
Std nTPM: 8.9
Median nTPM: 18.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 97.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 46.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 40.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 38.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 38.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 38.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 37.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 37.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 36.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 35.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 35.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 16.1
Samples: 246

Max nTPM: 48.5
Min nTPM: 0.0
Std nTPM: 7.6
Median nTPM: 15.1
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 48.5
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 38.1
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 38.0
GTEX-R55E-0011-R6A-SM-2TC5T 20-29 years, male 35.9
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 35.8
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 34.6
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 33.4
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 31.8
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 31.0
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 30.5
GTEX-X4XX-0011-R6B-SM-46MWP 60-69 years, male 30.4
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Brain - Putamen (basal ganglia)
Average nTPM: 18.3
Samples: 205

Max nTPM: 45.5
Min nTPM: 4.5
Std nTPM: 7.4
Median nTPM: 17.6
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 45.5
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 39.6
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 35.5
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 34.4
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 33.8
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 33.4
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 32.7
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 32.5
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 32.3
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 32.2
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 32.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 97.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 31.9
FF:10164-103B2 76 years, female 31.9
Globus pallidus
Scaled Tags Per Million: 60.8
FF:10161-103A8 76 years, female 67.2
FF:10175-103C4 60 years, female 54.4
Nucleus accumbens
Scaled Tags Per Million: 97.3
FF:10037-101F1 23-56 years, mixed 97.3
Putamen
Scaled Tags Per Million: 47.8
FF:10176-103C5 60 years, female 47.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 87.1
Pig sample Sample description nTPM
Caudate
nTPM: 38.2
Samples: 4

Max nTPM: 47.2
Min nTPM: 33.7
Sample A Female 47.2
Sample B Female 33.7
Sample C Male 36.1
Sample D Male 35.7
Putamen
nTPM: 87.1
Samples: 4

Max nTPM: 143.4
Min nTPM: 48.9
Sample A Female 143.4
Sample B Female 48.9
Sample C Male 72.7
Sample D Male 83.5
Septum
nTPM: 52.4
Samples: 4

Max nTPM: 68.0
Min nTPM: 36.6
Sample A Female 68.0
Sample B Female 36.6
Sample C Male 53.8
Sample D Male 51.0
Ventral pallidum
nTPM: 66.2
Samples: 4

Max nTPM: 85.1
Min nTPM: 45.4
Sample A Female 45.4
Sample B Female 55.5
Sample C Male 78.8
Sample D Male 85.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 78.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 54.4
Samples: 4

Max nTPM: 98.1
Min nTPM: 12.9
Sample A Male 12.9
Sample B Male 14.1
Sample C Female 98.1
Sample D Female 92.5
Septum
nTPM: 69.0
Samples: 4

Max nTPM: 102.8
Min nTPM: 34.1
Sample A Male 102.8
Sample B Male 66.1
Sample C Female 73.0
Sample D Female 34.1
Ventral forebrain
nTPM: 78.9
Samples: 4

Max nTPM: 116.2
Min nTPM: 29.1
Sample A Male 102.6
Sample B Male 29.1
Sample C Female 67.7
Sample D Female 116.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.4
73817427 Antisense, RP_051101_01_A02, Mouse strain C57BL/6J (56 days, male) 2.9
69407469 Antisense, RP_050414_01_G02, Mouse strain C57BL/6J (56 days, male) 1.8
Pallidum
Expression energy: 0.6
73817427 Antisense, RP_051101_01_A02, Mouse strain C57BL/6J (56 days, male) 0.9
69407469 Antisense, RP_050414_01_G02, Mouse strain C57BL/6J (56 days, male) 0.3

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.