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HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:123.8 nTPM
HPA:123.8 nTPM
GTEx:42.3 nTPM
FANTOM5:213.5 Scaled Tags Per Million
Pig:90.7 nTPM
Mouse:219.3 nTPM
Allen mouse:11.5 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 123.8
Sample id Sample description nTPM
Hippocampus
nTPM: 99.1
1898 Male, age 80, left hemisphere 131.9
1911 Female, age 85, right hemisphere 117.6
1855 Male, age 76, left hemisphere 112.3
2621 Female, age 67, right hemisphere 96.0
2529 Female, age 94, left hemisphere 74.3
2148 Female, age 91, left hemisphere 62.3
Dentate gyrus
nTPM: 86.4
2010 Male, age 76, both hemispheres 118.5
1927 Female, age 91, both hemispheres 105.9
2530 Female, age 94, left hemisphere 100.0
2246 Female, age 85, both hemispheres 76.0
2528 Male, age 74, both hemispheres 61.6
2531 Female, age 67, both hemispheres 56.6
Entorhinal gyrus
nTPM: 68.5
2764 Male, age 80, right hemisphere 79.3
2613 Female, age 94, left hemisphere 72.3
1938 Female, age 85, left hemisphere 71.1
1787 Male, age 76, left hemisphere 70.3
2117 Female, age 91, right hemisphere 66.8
2686 Male, age 75, right hemisphere 51.4
Hippocampus, CA1
nTPM: 123.8
2749 Male, age 80, left hemisphere 297.1
1873 Female, age 85, both hemispheres 102.3
2527 Male, age 74, both hemispheres 93.3
2082 Female, age 91, right hemisphere 65.9
2045 Male, age 76, both hemispheres 60.2
Hippocampus, CA2
nTPM: 97.8
1963 Male, age 80, left hemisphere 146.6
1892 Male, age 76, both hemispheres 130.5
2249 Male, age 74, both hemispheres 89.4
2437 Female, age 94, left hemisphere 77.1
2113 Female, age 91, right hemisphere 75.8
1940 Female, age 85, left hemisphere 67.1
Hippocampus, CA3
nTPM: 112.5
2137 Male, age 80, left hemisphere 282.9
1867 Male, age 76, both hemispheres 111.0
1891 Female, age 85, both hemispheres 83.3
2436 Male, age 74, both hemispheres 79.3
2861 Female, age 67, both hemispheres 66.7
2620 Female, age 94, left hemisphere 51.6
Parahippocampal cortex
nTPM: 71.2
2245 Female, age 91, both hemispheres 105.6
2018 Male, age 76, both hemispheres 85.9
1850 Male, age 80, both hemispheres 77.3
2532 Female, age 72, left hemisphere 74.9
2250 Female, age 67, right hemisphere 71.8
1933 Female, age 85, both hemispheres 67.9
1990 Female, age 91, right hemisphere 66.1
2693 Female, age 94, both hemispheres 59.4
2692 Male, age 74, both hemispheres 51.7
2622 Female, age 67, right hemisphere 51.0
Perirhinal gyrus
nTPM: 75.1
1794 Male, age 80, right hemisphere 80.5
1847 Female, age 91, left hemisphere 78.8
1841 Female, age 85, right hemisphere 73.4
2521 Female, age 94, right hemisphere 73.1
2848 Male, age 76, right hemisphere 69.7
Subiculum
nTPM: 86.4
1901 Male, age 80, both hemispheres 152.9
2042 Male, age 76, both hemispheres 108.4
1977 Female, age 85, both hemispheres 80.1
2438 Female, age 94, left hemisphere 71.8
2729 Female, age 91, right hemisphere 54.0
2619 Male, age 74, both hemispheres 51.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 42.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 42.3
Samples: 197

Max nTPM: 168.8
Min nTPM: 6.7
Std nTPM: 22.7
Median nTPM: 36.5
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 168.8
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 113.8
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 107.8
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 106.3
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 103.8
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 94.2
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 90.7
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 88.9
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 87.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 82.7
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 82.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 213.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 213.5
FF:10169-103B7 60 years, female 326.4
FF:10153-102I9 76 years, female 100.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 90.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 90.8
Samples: 4

Max nTPM: 128.3
Min nTPM: 42.0
Sample A Female 128.3
Sample B Female 80.1
Sample C Male 112.6
Sample D Male 42.0
Entorhinal cortex
nTPM: 60.3
Samples: 4

Max nTPM: 77.5
Min nTPM: 49.5
Sample A Female 49.5
Sample B Female 77.5
Sample C Male 51.6
Sample D Male 62.5
Subiculum
nTPM: 62.8
Samples: 4

Max nTPM: 87.0
Min nTPM: 43.1
Sample A Female 87.0
Sample B Female 57.4
Sample C Male 63.7
Sample D Male 43.1
Ventral hippocampus
nTPM: 83.2
Samples: 4

Max nTPM: 100.2
Min nTPM: 49.5
Sample A Female 100.2
Sample B Female 49.5
Sample C Male 83.1
Sample D Male 99.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 219.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 219.3
Samples: 4

Max nTPM: 253.9
Min nTPM: 200.7
Sample A Male 200.7
Sample B Male 253.9
Sample C Female 205.7
Sample D Female 217.0
Hippocampal formation
nTPM: 165.6
Samples: 4

Max nTPM: 198.6
Min nTPM: 148.3
Sample A Male 198.6
Sample B Male 166.9
Sample C Female 148.6
Sample D Female 148.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 11.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 11.5
73817427 Antisense, RP_051101_01_A02, Mouse strain C57BL/6J (56 days, male) 13.2
69407469 Antisense, RP_050414_01_G02, Mouse strain C57BL/6J (56 days, male) 9.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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