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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni
Consensus:132.5 nTPM
HPA:132.5 nTPM
GTEx:96.2 nTPM
FANTOM5:270.4 Scaled Tags Per Million
Pig:192.3 nTPM
Mouse:70.4 nTPM
Allen mouse:17.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA003456
Glial cells Low
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 132.5
Sample id Sample description nTPM
Hippocampus
nTPM: 117.8
1911 Female, age 85, right hemisphere 138.4
2529 Female, age 94, left hemisphere 131.9
2148 Female, age 91, left hemisphere 122.2
2621 Female, age 67, right hemisphere 113.8
1898 Male, age 80, left hemisphere 103.0
1855 Male, age 76, left hemisphere 97.5
Dentate gyrus
nTPM: 114.8
2530 Female, age 94, left hemisphere 175.7
2010 Male, age 76, both hemispheres 114.9
2246 Female, age 85, both hemispheres 111.5
2531 Female, age 67, both hemispheres 111.2
1927 Female, age 91, both hemispheres 97.4
2528 Male, age 74, both hemispheres 78.2
Entorhinal gyrus
nTPM: 115.3
2686 Male, age 75, right hemisphere 160.4
2117 Female, age 91, right hemisphere 150.9
2613 Female, age 94, left hemisphere 106.5
2764 Male, age 80, right hemisphere 104.6
1938 Female, age 85, left hemisphere 94.8
1787 Male, age 76, left hemisphere 74.6
Hippocampus, CA1
nTPM: 99.1
1873 Female, age 85, both hemispheres 127.2
2749 Male, age 80, left hemisphere 125.1
2527 Male, age 74, both hemispheres 95.7
2082 Female, age 91, right hemisphere 78.6
2045 Male, age 76, both hemispheres 68.8
Hippocampus, CA2
nTPM: 103.4
1963 Male, age 80, left hemisphere 170.9
2113 Female, age 91, right hemisphere 109.9
2437 Female, age 94, left hemisphere 104.6
2249 Male, age 74, both hemispheres 88.5
1892 Male, age 76, both hemispheres 75.9
1940 Female, age 85, left hemisphere 70.8
Hippocampus, CA3
nTPM: 86.4
2137 Male, age 80, left hemisphere 139.2
1891 Female, age 85, both hemispheres 135.5
1867 Male, age 76, both hemispheres 76.8
2861 Female, age 67, both hemispheres 74.8
2620 Female, age 94, left hemisphere 49.2
2436 Male, age 74, both hemispheres 43.0
Parahippocampal cortex
nTPM: 92.6
2532 Female, age 72, left hemisphere 142.1
2692 Male, age 74, both hemispheres 122.5
2245 Female, age 91, both hemispheres 108.4
1850 Male, age 80, both hemispheres 103.5
1990 Female, age 91, right hemisphere 95.4
2018 Male, age 76, both hemispheres 80.3
2622 Female, age 67, right hemisphere 77.6
1933 Female, age 85, both hemispheres 75.9
2693 Female, age 94, both hemispheres 60.5
2250 Female, age 67, right hemisphere 60.0
Perirhinal gyrus
nTPM: 60.6
1794 Male, age 80, right hemisphere 81.5
2848 Male, age 76, right hemisphere 74.4
2521 Female, age 94, right hemisphere 51.6
1841 Female, age 85, right hemisphere 49.2
1847 Female, age 91, left hemisphere 46.3
Subiculum
nTPM: 132.5
2042 Male, age 76, both hemispheres 199.3
2438 Female, age 94, left hemisphere 161.9
1901 Male, age 80, both hemispheres 141.8
1977 Female, age 85, both hemispheres 103.5
2729 Female, age 91, right hemisphere 95.8
2619 Male, age 74, both hemispheres 92.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 96.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 96.2
Samples: 197

Max nTPM: 340.8
Min nTPM: 20.0
Std nTPM: 51.3
Median nTPM: 81.2
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 340.8
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 313.9
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 273.6
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 252.3
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 242.5
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 225.2
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 210.8
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 208.6
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 204.9
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 197.3
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 192.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 270.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 270.4
FF:10169-103B7 60 years, female 275.1
FF:10153-102I9 76 years, female 265.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 192.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 192.3
Samples: 4

Max nTPM: 237.7
Min nTPM: 152.9
Sample A Female 237.7
Sample B Female 190.8
Sample C Male 187.9
Sample D Male 152.9
Entorhinal cortex
nTPM: 86.5
Samples: 4

Max nTPM: 97.4
Min nTPM: 77.8
Sample A Female 89.3
Sample B Female 97.4
Sample C Male 77.8
Sample D Male 81.4
Subiculum
nTPM: 82.1
Samples: 4

Max nTPM: 91.8
Min nTPM: 76.4
Sample A Female 91.8
Sample B Female 82.7
Sample C Male 76.4
Sample D Male 77.4
Ventral hippocampus
nTPM: 141.9
Samples: 4

Max nTPM: 230.7
Min nTPM: 98.4
Sample A Female 135.3
Sample B Female 103.2
Sample C Male 98.4
Sample D Male 230.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 70.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 38.7
Samples: 4

Max nTPM: 44.7
Min nTPM: 34.3
Sample A Male 44.7
Sample B Male 36.1
Sample C Female 39.8
Sample D Female 34.3
Hippocampal formation
nTPM: 70.5
Samples: 4

Max nTPM: 86.0
Min nTPM: 54.4
Sample A Male 54.4
Sample B Male 79.1
Sample C Female 86.0
Sample D Female 62.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 17.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 17.2
68844468 Antisense, RP_050222_01_F10, Mouse strain C57BL/6J (56 days, male) 18.5
71924066 Antisense, RP_051017_02_H07, Mouse strain C57BL/6J (56 days, male) 15.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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