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TM4SF1
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:43.1 nTPM
HPA:43.1 nTPM
GTEx:48.0 nTPM
FANTOM5:75.6 Scaled Tags Per Million
Pig:8.5 nTPM
Mouse:45.4 nTPM
Allen mouse:1.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA002823Antibody CAB002760
Glial cells Not detectedNot detected
Neuronal cells Not detectedLow





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 43.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 41.8
1781 Male, age 74, unknown 44.7
2846 Female, age 79, unknown 44.1
2481 Female, age 94, left hemisphere 44.0
2290 Female, age 72, unknown 42.1
1857 Female, age 85, left hemisphere 41.5
1854 Male, age 80, left hemisphere 41.0
2288 Male, age 75, left hemisphere 38.7
2289 Male, age 61, right hemisphere 38.0
Claustrum
nTPM: 38.8
2392 Female, age 94, both hemispheres 40.2
2292 Female, age 85, both hemispheres 39.9
2196 Female, age 79, unknown 39.7
1956 Male, age 74, unknown 38.7
2198 Male, age 80, both hemispheres 38.7
2284 Female, age 91, both hemispheres 38.6
2491 Male, age 75, both hemispheres 38.5
2645 Female, age 72, unknown 38.3
2568 Male, age 61, both hemispheres 37.0
Globus pallidus, externus
nTPM: 41.3
2772 Female, age 79, unknown 43.7
1996 Male, age 80, right hemisphere 43.0
2395 Male, age 75, both hemispheres 41.2
2646 Male, age 61, right hemisphere 40.7
2567 Female, age 72, unknown 37.7
Globus pallidus, internus
nTPM: 41.9
2287 Male, age 75, right hemisphere 45.5
2483 Female, age 94, right hemisphere 43.4
2037 Male, age 80, right hemisphere 43.3
1818 Male, age 74, unknown 41.2
2778 Female, age 91, both hemispheres 40.9
2111 Female, age 85, right hemisphere 40.8
2566 Female, age 72, unknown 38.3
Nucleus accumbens
nTPM: 39.1
2391 Female, age 94, left hemisphere 40.9
1783 Male, age 74, unknown 40.0
2698 Female, age 72, unknown 39.7
1806 Female, age 85, left hemisphere 39.4
1856 Female, age 91, right hemisphere 39.1
2286 Male, age 75, left hemisphere 39.1
2732 Male, age 80, right hemisphere 38.2
2824 Male, age 61, right hemisphere 36.5
Nucleus basalis of Meynert
nTPM: 43.1
2484 Female, age 94, left hemisphere 44.7
2821 Male, age 75, both hemispheres 43.2
2393 Male, age 80, right hemisphere 42.4
2569 Male, age 61, both hemispheres 42.1
Nucleus of the diagonal band
nTPM: 37.9
1812 Female, age 91, both hemispheres 38.8
2029 Male, age 61, right hemisphere 38.7
2775 Male, age 80, right hemisphere 37.4
2195 Female, age 85, both hemispheres 37.3
1979 Male, age 74, unknown 37.2
Olfactory tubercle
nTPM: 37.9
2856 Male, age 75, right hemisphere 39.3
1846 Male, age 80, right hemisphere 38.0
1998 Female, age 91, both hemispheres 37.9
2487 Female, age 94, left hemisphere 36.5
Putamen
nTPM: 40.6
2466 Female, age 79, unknown 42.5
2489 Female, age 72, unknown 42.5
2482 Female, age 94, left hemisphere 42.1
1838 Male, age 80, right hemisphere 40.4
1829 Male, age 74, unknown 39.8
1937 Female, age 91, right hemisphere 39.8
2647 Male, age 75, left hemisphere 37.0
Septal nuclei
nTPM: 39.1
2394 Male, age 61, left hemisphere 43.4
2031 Female, age 72, unknown 40.6
2199 Male, age 80, right hemisphere 40.1
1960 Male, age 74, unknown 38.7
2009 Female, age 91, both hemispheres 37.1
2059 Female, age 85, both hemispheres 37.1
2629 Female, age 94, right hemisphere 36.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 48.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 38.6
Samples: 246

Max nTPM: 397.3
Min nTPM: 4.3
Std nTPM: 41.2
Median nTPM: 26.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 397.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 336.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 215.8
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 144.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 140.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 115.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 110.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 105.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 98.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 98.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 98.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 32.5
Samples: 246

Max nTPM: 444.0
Min nTPM: 3.6
Std nTPM: 46.3
Median nTPM: 18.5
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 444.0
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 260.6
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 239.3
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 233.2
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 191.6
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 183.3
GTEX-11O72-0011-R6a-SM-DNZZQ 40-49 years, male 156.9
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 153.0
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 151.7
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 140.1
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 117.3
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Brain - Putamen (basal ganglia)
Average nTPM: 48.0
Samples: 205

Max nTPM: 341.8
Min nTPM: 7.2
Std nTPM: 47.5
Median nTPM: 32.3
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 341.8
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 285.5
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 275.4
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 235.6
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 196.2
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 192.1
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 141.0
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 138.6
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 138.6
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 136.8
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 134.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 75.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 58.8
FF:10164-103B2 76 years, female 58.8
Globus pallidus
Scaled Tags Per Million: 75.6
FF:10161-103A8 76 years, female 81.8
FF:10175-103C4 60 years, female 69.4
Nucleus accumbens
Scaled Tags Per Million: 29.7
FF:10037-101F1 23-56 years, mixed 29.7
Putamen
Scaled Tags Per Million: 31.6
FF:10176-103C5 60 years, female 31.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 8.5
Pig sample Sample description nTPM
Caudate
nTPM: 6.6
Samples: 4

Max nTPM: 8.7
Min nTPM: 5.5
Sample A Female 8.7
Sample B Female 5.9
Sample C Male 6.4
Sample D Male 5.5
Putamen
nTPM: 7.6
Samples: 4

Max nTPM: 10.8
Min nTPM: 4.7
Sample A Female 10.8
Sample B Female 4.7
Sample C Male 8.7
Sample D Male 6.2
Septum
nTPM: 8.5
Samples: 4

Max nTPM: 10.0
Min nTPM: 5.4
Sample A Female 8.9
Sample B Female 5.4
Sample C Male 10.0
Sample D Male 9.7
Ventral pallidum
nTPM: 6.1
Samples: 4

Max nTPM: 6.3
Min nTPM: 5.8
Sample A Female 5.8
Sample B Female 6.2
Sample C Male 6.3
Sample D Male 6.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 45.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 30.4
Samples: 4

Max nTPM: 32.7
Min nTPM: 27.1
Sample A Male 29.8
Sample B Male 32.7
Sample C Female 27.1
Sample D Female 32.1
Septum
nTPM: 45.5
Samples: 4

Max nTPM: 50.2
Min nTPM: 35.9
Sample A Male 35.9
Sample B Male 49.0
Sample C Female 50.2
Sample D Female 46.7
Ventral forebrain
nTPM: 21.2
Samples: 4

Max nTPM: 28.0
Min nTPM: 16.5
Sample A Male 17.0
Sample B Male 23.1
Sample C Female 28.0
Sample D Female 16.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.0
69981043 Antisense, RP_050512_04_E10, Mouse strain C57BL/6J (56 days, male) 1.4
74882950 Antisense, RP_060315_04_H12, Mouse strain C57BL/6J (56 days, male) 0.5
Pallidum
Expression energy: 0.7
69981043 Antisense, RP_050512_04_E10, Mouse strain C57BL/6J (56 days, male) 1.1
74882950 Antisense, RP_060315_04_H12, Mouse strain C57BL/6J (56 days, male) 0.4

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.