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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:49.6 nTPM
HPA:49.6 nTPM
GTEx:49.1 nTPM
FANTOM5:68.4 Scaled Tags Per Million
Pig:15.4 nTPM
Mouse:5.3 nTPM
Allen mouse:0.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA043598Antibody HPA044150
Glial cells Not detectedLow
Neuronal cells LowHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 49.6
Sample id Sample description nTPM
Hippocampus
nTPM: 46.1
2529 Female, age 94, left hemisphere 49.0
2621 Female, age 67, right hemisphere 47.8
2148 Female, age 91, left hemisphere 46.9
1898 Male, age 80, left hemisphere 46.1
1911 Female, age 85, right hemisphere 43.7
1855 Male, age 76, left hemisphere 43.0
Dentate gyrus
nTPM: 47.1
2530 Female, age 94, left hemisphere 57.3
2528 Male, age 74, both hemispheres 48.1
2010 Male, age 76, both hemispheres 47.7
2246 Female, age 85, both hemispheres 45.9
2531 Female, age 67, both hemispheres 45.3
1927 Female, age 91, both hemispheres 38.1
Entorhinal gyrus
nTPM: 49.6
2117 Female, age 91, right hemisphere 57.8
2686 Male, age 75, right hemisphere 51.9
2613 Female, age 94, left hemisphere 48.7
2764 Male, age 80, right hemisphere 47.2
1787 Male, age 76, left hemisphere 46.9
1938 Female, age 85, left hemisphere 44.8
Hippocampus, CA1
nTPM: 42.0
2527 Male, age 74, both hemispheres 46.5
2082 Female, age 91, right hemisphere 45.6
1873 Female, age 85, both hemispheres 41.0
2749 Male, age 80, left hemisphere 38.7
2045 Male, age 76, both hemispheres 38.2
Hippocampus, CA2
nTPM: 46.2
1940 Female, age 85, left hemisphere 49.4
2113 Female, age 91, right hemisphere 49.4
1963 Male, age 80, left hemisphere 47.7
2437 Female, age 94, left hemisphere 47.5
2249 Male, age 74, both hemispheres 45.9
1892 Male, age 76, both hemispheres 37.5
Hippocampus, CA3
nTPM: 41.5
2861 Female, age 67, both hemispheres 44.5
1891 Female, age 85, both hemispheres 44.3
2436 Male, age 74, both hemispheres 43.3
2137 Male, age 80, left hemisphere 39.6
2620 Female, age 94, left hemisphere 39.3
1867 Male, age 76, both hemispheres 38.3
Parahippocampal cortex
nTPM: 44.8
2692 Male, age 74, both hemispheres 49.0
2622 Female, age 67, right hemisphere 48.6
2018 Male, age 76, both hemispheres 48.2
1990 Female, age 91, right hemisphere 46.1
2532 Female, age 72, left hemisphere 45.9
1933 Female, age 85, both hemispheres 44.0
2245 Female, age 91, both hemispheres 44.0
2250 Female, age 67, right hemisphere 42.6
1850 Male, age 80, both hemispheres 41.8
2693 Female, age 94, both hemispheres 38.2
Perirhinal gyrus
nTPM: 41.3
2848 Male, age 76, right hemisphere 42.1
1794 Male, age 80, right hemisphere 42.0
1841 Female, age 85, right hemisphere 41.6
1847 Female, age 91, left hemisphere 40.9
2521 Female, age 94, right hemisphere 39.6
Subiculum
nTPM: 48.7
2042 Male, age 76, both hemispheres 53.2
2729 Female, age 91, right hemisphere 50.8
2619 Male, age 74, both hemispheres 49.7
1977 Female, age 85, both hemispheres 46.9
2438 Female, age 94, left hemisphere 45.9
1901 Male, age 80, both hemispheres 45.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 49.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 49.1
Samples: 197

Max nTPM: 132.2
Min nTPM: 20.5
Std nTPM: 19.5
Median nTPM: 45.7
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 132.2
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 124.5
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 122.1
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 103.4
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 99.9
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 97.2
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 94.1
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 93.3
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 92.8
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 86.8
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 86.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 68.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 68.4
FF:10153-102I9 76 years, female 89.7
FF:10169-103B7 60 years, female 47.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 15.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 9.6
Samples: 4

Max nTPM: 10.5
Min nTPM: 7.6
Sample A Female 10.0
Sample B Female 10.2
Sample C Male 10.5
Sample D Male 7.6
Entorhinal cortex
nTPM: 15.1
Samples: 4

Max nTPM: 17.7
Min nTPM: 12.8
Sample A Female 17.2
Sample B Female 12.8
Sample C Male 17.7
Sample D Male 12.8
Subiculum
nTPM: 15.4
Samples: 4

Max nTPM: 17.3
Min nTPM: 13.9
Sample A Female 17.3
Sample B Female 13.9
Sample C Male 15.5
Sample D Male 14.7
Ventral hippocampus
nTPM: 12.7
Samples: 4

Max nTPM: 17.5
Min nTPM: 10.3
Sample A Female 12.0
Sample B Female 10.9
Sample C Male 17.5
Sample D Male 10.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 5.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 4.7
Samples: 4

Max nTPM: 5.2
Min nTPM: 4.3
Sample A Male 5.2
Sample B Male 4.3
Sample C Female 4.4
Sample D Female 4.8
Hippocampal formation
nTPM: 5.3
Samples: 4

Max nTPM: 6.9
Min nTPM: 4.3
Sample A Male 4.3
Sample B Male 5.2
Sample C Female 4.7
Sample D Female 6.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.4
68745179 Antisense, RP_050210_01_D06, Mouse strain C57BL/6J (56 days, male) 0.4

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