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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:1644.2 nTPM
HPA:1644.2 nTPM
GTEx:1736.6 nTPM
FANTOM5:531.0 Scaled Tags Per Million
Pig:1550.9 nTPM
Mouse:2405.8 nTPM

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041344Antibody HPA049132Antibody CAB013048
Glial cells LowLowMedium
Neuronal cells LowMediumLow







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 1644.2
Sample id Sample description nTPM
Hippocampus
nTPM: 1594.6
1898 Male, age 80, left hemisphere 1703.9
2529 Female, age 94, left hemisphere 1683.6
1855 Male, age 76, left hemisphere 1571.7
2621 Female, age 67, right hemisphere 1555.8
2148 Female, age 91, left hemisphere 1533.0
1911 Female, age 85, right hemisphere 1519.6
Dentate gyrus
nTPM: 1578.7
2010 Male, age 76, both hemispheres 1714.0
2530 Female, age 94, left hemisphere 1648.5
1927 Female, age 91, both hemispheres 1610.3
2246 Female, age 85, both hemispheres 1561.6
2531 Female, age 67, both hemispheres 1472.7
2528 Male, age 74, both hemispheres 1464.9
Entorhinal gyrus
nTPM: 1522.2
2764 Male, age 80, right hemisphere 1619.9
1938 Female, age 85, left hemisphere 1596.8
2117 Female, age 91, right hemisphere 1553.3
1787 Male, age 76, left hemisphere 1532.0
2686 Male, age 75, right hemisphere 1431.7
2613 Female, age 94, left hemisphere 1399.5
Hippocampus, CA1
nTPM: 1644.2
2749 Male, age 80, left hemisphere 1784.5
2527 Male, age 74, both hemispheres 1662.1
1873 Female, age 85, both hemispheres 1661.8
2045 Male, age 76, both hemispheres 1621.7
2082 Female, age 91, right hemisphere 1491.0
Hippocampus, CA2
nTPM: 1601.3
1892 Male, age 76, both hemispheres 1720.3
1963 Male, age 80, left hemisphere 1700.3
2249 Male, age 74, both hemispheres 1583.8
2437 Female, age 94, left hemisphere 1573.4
1940 Female, age 85, left hemisphere 1529.9
2113 Female, age 91, right hemisphere 1500.3
Hippocampus, CA3
nTPM: 1550.4
1867 Male, age 76, both hemispheres 1644.9
2137 Male, age 80, left hemisphere 1595.0
2436 Male, age 74, both hemispheres 1564.1
1891 Female, age 85, both hemispheres 1533.5
2620 Female, age 94, left hemisphere 1519.8
2861 Female, age 67, both hemispheres 1445.3
Parahippocampal cortex
nTPM: 1533.6
2245 Female, age 91, both hemispheres 1641.7
1850 Male, age 80, both hemispheres 1618.8
1933 Female, age 85, both hemispheres 1597.1
2018 Male, age 76, both hemispheres 1593.5
1990 Female, age 91, right hemisphere 1572.4
2532 Female, age 72, left hemisphere 1550.1
2250 Female, age 67, right hemisphere 1508.6
2692 Male, age 74, both hemispheres 1480.9
2622 Female, age 67, right hemisphere 1394.4
2693 Female, age 94, both hemispheres 1378.8
Perirhinal gyrus
nTPM: 1588.2
1847 Female, age 91, left hemisphere 1740.8
1794 Male, age 80, right hemisphere 1640.9
1841 Female, age 85, right hemisphere 1554.4
2848 Male, age 76, right hemisphere 1512.2
2521 Female, age 94, right hemisphere 1492.8
Subiculum
nTPM: 1558.5
2438 Female, age 94, left hemisphere 1630.5
1901 Male, age 80, both hemispheres 1598.9
1977 Female, age 85, both hemispheres 1571.4
2619 Male, age 74, both hemispheres 1552.7
2042 Male, age 76, both hemispheres 1534.2
2729 Female, age 91, right hemisphere 1463.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 1736.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 1736.6
Samples: 197

Max nTPM: 3972.7
Min nTPM: 1052.9
Std nTPM: 417.2
Median nTPM: 1674.4
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 3972.7
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 3269.7
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 2800.3
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 2785.0
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 2569.3
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 2540.2
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 2535.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 2525.6
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 2513.7
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 2505.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 2480.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 531.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 531.0
FF:10169-103B7 60 years, female 645.6
FF:10153-102I9 76 years, female 416.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 1550.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 1550.9
Samples: 4

Max nTPM: 2194.7
Min nTPM: 1107.8
Sample A Female 2194.7
Sample B Female 1561.1
Sample C Male 1340.1
Sample D Male 1107.8
Entorhinal cortex
nTPM: 1168.7
Samples: 4

Max nTPM: 1445.3
Min nTPM: 842.0
Sample A Female 1283.6
Sample B Female 1445.3
Sample C Male 1103.7
Sample D Male 842.0
Subiculum
nTPM: 1175.2
Samples: 4

Max nTPM: 1561.9
Min nTPM: 965.3
Sample A Female 1561.9
Sample B Female 1179.7
Sample C Male 993.7
Sample D Male 965.3
Ventral hippocampus
nTPM: 1386.6
Samples: 4

Max nTPM: 1554.2
Min nTPM: 1064.6
Sample A Female 1554.2
Sample B Female 1064.6
Sample C Male 1506.6
Sample D Male 1421.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 2405.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 2157.4
Samples: 4

Max nTPM: 2337.4
Min nTPM: 1970.3
Sample A Male 1970.3
Sample B Male 2119.6
Sample C Female 2337.4
Sample D Female 2202.2
Hippocampal formation
nTPM: 2405.8
Samples: 4

Max nTPM: 2518.0
Min nTPM: 2170.6
Sample A Male 2496.7
Sample B Male 2170.6
Sample C Female 2518.0
Sample D Female 2437.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.