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HSPA4
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:37.2 nTPM
HPA:37.2 nTPM
GTEx:23.7 nTPM
FANTOM5:138.0 Scaled Tags Per Million
Pig:56.5 nTPM
Mouse:115.7 nTPM
Allen mouse:10.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA010023Antibody CAB025529
Glial cells LowMedium
Neuronal cells MediumLow





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 37.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 33.6
2481 Female, age 94, left hemisphere 45.7
2288 Male, age 75, left hemisphere 36.5
2846 Female, age 79, unknown 34.3
2289 Male, age 61, right hemisphere 32.1
1857 Female, age 85, left hemisphere 31.7
2290 Female, age 72, unknown 30.5
1781 Male, age 74, unknown 29.6
1854 Male, age 80, left hemisphere 28.4
Claustrum
nTPM: 32.1
2198 Male, age 80, both hemispheres 37.0
1956 Male, age 74, unknown 36.1
2392 Female, age 94, both hemispheres 33.9
2196 Female, age 79, unknown 33.7
2491 Male, age 75, both hemispheres 31.4
2284 Female, age 91, both hemispheres 31.0
2292 Female, age 85, both hemispheres 29.9
2568 Male, age 61, both hemispheres 29.5
2645 Female, age 72, unknown 26.7
Globus pallidus, externus
nTPM: 30.7
2772 Female, age 79, unknown 37.7
2395 Male, age 75, both hemispheres 36.1
1996 Male, age 80, right hemisphere 32.1
2646 Male, age 61, right hemisphere 26.7
2567 Female, age 72, unknown 20.9
Globus pallidus, internus
nTPM: 32.9
2483 Female, age 94, right hemisphere 41.8
2287 Male, age 75, right hemisphere 39.9
2778 Female, age 91, both hemispheres 35.2
1818 Male, age 74, unknown 32.4
2037 Male, age 80, right hemisphere 30.3
2111 Female, age 85, right hemisphere 26.0
2566 Female, age 72, unknown 24.6
Nucleus accumbens
nTPM: 33.9
2391 Female, age 94, left hemisphere 49.6
2286 Male, age 75, left hemisphere 36.0
2698 Female, age 72, unknown 35.3
1856 Female, age 91, right hemisphere 35.0
2824 Male, age 61, right hemisphere 30.1
1806 Female, age 85, left hemisphere 29.5
1783 Male, age 74, unknown 28.6
2732 Male, age 80, right hemisphere 26.7
Nucleus basalis of Meynert
nTPM: 30.2
2484 Female, age 94, left hemisphere 35.1
2821 Male, age 75, both hemispheres 32.6
2393 Male, age 80, right hemisphere 28.4
2569 Male, age 61, both hemispheres 24.7
Nucleus of the diagonal band
nTPM: 37.2
1812 Female, age 91, both hemispheres 44.4
2775 Male, age 80, right hemisphere 39.7
2195 Female, age 85, both hemispheres 38.8
1979 Male, age 74, unknown 32.7
2029 Male, age 61, right hemisphere 30.5
Olfactory tubercle
nTPM: 33.5
1846 Male, age 80, right hemisphere 37.9
1998 Female, age 91, both hemispheres 36.4
2856 Male, age 75, right hemisphere 32.5
2487 Female, age 94, left hemisphere 27.0
Putamen
nTPM: 31.5
2482 Female, age 94, left hemisphere 43.3
2466 Female, age 79, unknown 33.3
1829 Male, age 74, unknown 31.9
1937 Female, age 91, right hemisphere 31.3
2647 Male, age 75, left hemisphere 28.6
1838 Male, age 80, right hemisphere 28.5
2489 Female, age 72, unknown 23.4
Septal nuclei
nTPM: 34.5
1960 Male, age 74, unknown 40.5
2031 Female, age 72, unknown 39.7
2009 Female, age 91, both hemispheres 38.2
2629 Female, age 94, right hemisphere 36.7
2199 Male, age 80, right hemisphere 31.7
2059 Female, age 85, both hemispheres 28.7
2394 Male, age 61, left hemisphere 26.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 23.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 23.7
Samples: 246

Max nTPM: 113.6
Min nTPM: 15.8
Std nTPM: 9.4
Median nTPM: 21.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 113.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 85.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 66.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 51.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 50.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 46.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 43.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 43.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 42.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 42.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 39.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 23.7
Samples: 246

Max nTPM: 64.9
Min nTPM: 10.5
Std nTPM: 7.7
Median nTPM: 22.1
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 64.9
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 61.3
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 61.3
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 57.9
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 54.3
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 50.9
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 47.8
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 43.1
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 42.5
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 38.4
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 38.2
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Brain - Putamen (basal ganglia)
Average nTPM: 22.8
Samples: 205

Max nTPM: 54.2
Min nTPM: 15.3
Std nTPM: 5.2
Median nTPM: 21.9
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 54.2
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 49.9
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 42.6
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 41.6
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 39.0
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 36.1
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 36.1
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 34.3
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 33.9
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 33.8
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 33.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 138.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 134.1
FF:10164-103B2 76 years, female 134.1
Globus pallidus
Scaled Tags Per Million: 121.5
FF:10161-103A8 76 years, female 130.9
FF:10175-103C4 60 years, female 112.0
Nucleus accumbens
Scaled Tags Per Million: 138.0
FF:10037-101F1 23-56 years, mixed 138.0
Putamen
Scaled Tags Per Million: 120.2
FF:10176-103C5 60 years, female 120.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 56.5
Pig sample Sample description nTPM
Caudate
nTPM: 46.8
Samples: 4

Max nTPM: 53.2
Min nTPM: 42.8
Sample A Female 47.0
Sample B Female 42.8
Sample C Male 53.2
Sample D Male 44.1
Putamen
nTPM: 56.5
Samples: 4

Max nTPM: 82.3
Min nTPM: 45.6
Sample A Female 48.0
Sample B Female 45.6
Sample C Male 82.3
Sample D Male 50.2
Septum
nTPM: 53.5
Samples: 4

Max nTPM: 66.0
Min nTPM: 44.1
Sample A Female 47.5
Sample B Female 44.1
Sample C Male 66.0
Sample D Male 56.5
Ventral pallidum
nTPM: 49.9
Samples: 4

Max nTPM: 60.6
Min nTPM: 44.0
Sample A Female 47.3
Sample B Female 47.5
Sample C Male 60.6
Sample D Male 44.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 115.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 101.1
Samples: 4

Max nTPM: 103.7
Min nTPM: 97.7
Sample A Male 102.0
Sample B Male 97.7
Sample C Female 103.7
Sample D Female 101.1
Septum
nTPM: 115.7
Samples: 4

Max nTPM: 123.8
Min nTPM: 108.3
Sample A Male 108.3
Sample B Male 115.0
Sample C Female 115.8
Sample D Female 123.8
Ventral forebrain
nTPM: 101.7
Samples: 4

Max nTPM: 108.2
Min nTPM: 95.3
Sample A Male 95.3
Sample B Male 104.4
Sample C Female 98.9
Sample D Female 108.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 10.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 10.0
632500 Antisense, RP_040907_01_E08, Mouse strain C57BL/6J (56 days, male) 12.8
73870767 Antisense, RP_051212_04_E10, Mouse strain C57BL/6J (56 days, male) 7.3
Pallidum
Expression energy: 8.7
632500 Antisense, RP_040907_01_E08, Mouse strain C57BL/6J (56 days, male) 11.0
73870767 Antisense, RP_051212_04_E10, Mouse strain C57BL/6J (56 days, male) 6.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.