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RNF34
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.6 nTPM
HPA:26.6 nTPM
GTEx:22.0 nTPM
FANTOM5:38.5 Scaled Tags Per Million
Pig:19.1 nTPM
Mouse:26.5 nTPM
Allen mouse:5.9 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.4
2411 Female, age 72, unknown 26.9
2586 Male, age 75, left hemisphere 26.6
2666 Male, age 74, left hemisphere 26.1
1870 Female, age 42, unknown 26.0
1833 Male, age 53, unknown 25.7
1830 Male, age 51, unknown 25.0
2019 Male, age 18, unknown 25.0
2219 Male, age 76, both hemispheres 24.5
1827 Male, age 72, unknown 24.0
2828 Female, age 72, unknown 24.0
Dorsal raphe nucleus
nTPM: 22.1
2750 Male, age 76, both hemispheres 24.6
1828 Male, age 53, unknown 23.3
2047 Male, age 72, unknown 22.4
2016 Female, age 72, unknown 20.4
2298 Female, age 72, unknown 19.9
Inferior colliculus
nTPM: 23.7
1848 Female, age 42, unknown 24.5
1890 Male, age 53, unknown 24.0
2849 Male, age 72, unknown 23.7
2097 Female, age 72, unknown 22.6
Median raphe nucleus
nTPM: 24.8
2220 Male, age 76, midline 24.8
Pedunculopontine tegmental nucleus
nTPM: 24.5
2334 Male, age 80, both hemispheres 25.2
1921 Female, age 85, both hemispheres 24.7
2338 Male, age 61, both hemispheres 23.7
Periaquaductal grey, anterior
nTPM: 22.8
2502 Female, age 75, unknown 23.7
1947 Male, age 18, unknown 22.6
1795 Male, age 51, unknown 22.1
Periaquaductal grey, dorsal
nTPM: 21.7
1831 Male, age 72, unknown 23.3
2464 Female, age 72, unknown 21.8
1840 Male, age 53, unknown 21.3
2850 Male, age 76, both hemispheres 20.5
Periaquaductal grey, lateral
nTPM: 21.7
2053 Male, age 18, unknown 24.3
2140 Male, age 76, both hemispheres 20.9
2272 Male, age 74, both hemispheres 19.9
Pretectal area
nTPM: 23.5
1817 Female, age 42, unknown 26.7
1816 Male, age 51, unknown 26.0
2007 Male, age 72, unknown 25.5
1815 Male, age 53, unknown 24.9
2407 Male, age 75, both hemispheres 24.2
1944 Female, age 72, unknown 23.6
2316 Male, age 76, right hemisphere 22.7
2667 Female, age 75, unknown 22.7
2825 Male, age 18, unknown 22.5
2273 Male, age 74, both hemispheres 20.0
2224 Female, age 72, unknown 19.4
Red nucleus
nTPM: 26.6
2588 Male, age 74, left hemisphere 30.7
1904 Male, age 53, unknown 28.1
1821 Female, age 72, unknown 27.4
1865 Male, age 51, unknown 26.9
2823 Male, age 76, right hemisphere 26.9
2725 Female, age 75, unknown 26.3
2785 Male, age 18, unknown 26.2
2584 Male, age 75, left hemisphere 26.0
1954 Female, age 42, unknown 25.8
2503 Female, age 72, unknown 25.7
2769 Male, age 72, unknown 25.4
2227 Male, age 72, unknown 24.1
Substantia nigra
nTPM: 25.5
2409 Female, age 72, unknown 28.9
2583 Male, age 75, right hemisphere 27.1
1889 Female, age 72, unknown 26.6
2241 Male, age 72, unknown 26.4
1916 Female, age 42, unknown 26.3
2590 Female, age 75, unknown 24.9
1851 Male, age 51, unknown 24.6
2699 Male, age 18, unknown 24.2
1941 Male, age 53, unknown 23.3
2665 Male, age 74, both hemispheres 22.7
Superior colliculus
nTPM: 24.0
1839 Male, age 51, unknown 25.1
1895 Male, age 76, right hemisphere 24.9
2668 Female, age 75, unknown 24.5
1796 Male, age 53, unknown 24.3
2087 Female, age 72, unknown 24.1
2261 Male, age 18, unknown 24.1
2587 Male, age 74, left hemisphere 23.9
1913 Female, age 42, unknown 23.5
1995 Male, age 72, unknown 23.5
2664 Male, age 75, both hemispheres 22.0
Ventral tegmental area
nTPM: 24.6
2410 Female, age 72, unknown 26.9
2223 Female, age 72, unknown 26.2
2218 Male, age 76, both hemispheres 26.0
1915 Female, age 42, unknown 23.9
1942 Male, age 51, unknown 22.4
2021 Male, age 53, unknown 22.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 22.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.0
Samples: 139

Max nTPM: 33.3
Min nTPM: 14.9
Std nTPM: 3.6
Median nTPM: 21.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 33.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 32.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 31.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 31.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 30.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 30.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 30.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 29.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 28.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 27.8
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 27.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 38.5
FF:10158-103A5 76 years, female 38.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 19.1
Pig sample Sample description nTPM
Midbrain
nTPM: 19.1
Samples: 4

Max nTPM: 33.3
Min nTPM: 13.6
Sample A Female 33.3
Sample B Female 13.6
Sample C Male 13.9
Sample D Male 15.7
Periaqueductal gray
nTPM: 14.2
Samples: 3

Max nTPM: 15.0
Min nTPM: 13.5
Sample B Female 14.0
Sample C Male 15.0
Sample D Male 13.5
Substantia nigra
nTPM: 18.5
Samples: 4

Max nTPM: 23.4
Min nTPM: 13.8
Sample A Female 23.4
Sample B Female 13.8
Sample C Male 17.6
Sample D Male 19.0
Superior colliculi
nTPM: 16.3
Samples: 4

Max nTPM: 20.3
Min nTPM: 12.1
Sample A Female 20.3
Sample B Female 12.1
Sample C Male 15.7
Sample D Male 17.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 26.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.5
Samples: 4

Max nTPM: 26.9
Min nTPM: 26.1
Sample A Male 26.9
Sample B Male 26.8
Sample C Female 26.1
Sample D Female 26.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.9
71608202 Antisense, RP_050927_01_A10, Mouse strain C57BL/6J (56 days, male) 5.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.