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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:63.9 nTPM
HPA:63.9 nTPM
GTEx:79.9 nTPM
FANTOM5:180.6 Scaled Tags Per Million
Pig:28.6 nTPM
Mouse:43.1 nTPM
Allen mouse:0.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA035301
Glial cells Medium
Neuronal cells Medium


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 63.9
Sample id Sample description nTPM
Hippocampus
nTPM: 62.2
2529 Female, age 94, left hemisphere 64.4
1898 Male, age 80, left hemisphere 63.6
1855 Male, age 76, left hemisphere 63.2
2621 Female, age 67, right hemisphere 61.2
1911 Female, age 85, right hemisphere 61.0
2148 Female, age 91, left hemisphere 59.6
Dentate gyrus
nTPM: 61.8
2528 Male, age 74, both hemispheres 63.7
1927 Female, age 91, both hemispheres 63.0
2010 Male, age 76, both hemispheres 63.0
2530 Female, age 94, left hemisphere 62.4
2246 Female, age 85, both hemispheres 59.6
2531 Female, age 67, both hemispheres 58.8
Entorhinal gyrus
nTPM: 61.3
1938 Female, age 85, left hemisphere 63.9
2764 Male, age 80, right hemisphere 62.5
2117 Female, age 91, right hemisphere 62.1
1787 Male, age 76, left hemisphere 60.3
2686 Male, age 75, right hemisphere 60.2
2613 Female, age 94, left hemisphere 58.9
Hippocampus, CA1
nTPM: 63.9
2749 Male, age 80, left hemisphere 65.4
2045 Male, age 76, both hemispheres 64.5
1873 Female, age 85, both hemispheres 64.1
2527 Male, age 74, both hemispheres 64.1
2082 Female, age 91, right hemisphere 61.3
Hippocampus, CA2
nTPM: 63.0
1892 Male, age 76, both hemispheres 68.1
1963 Male, age 80, left hemisphere 65.9
2249 Male, age 74, both hemispheres 63.7
2437 Female, age 94, left hemisphere 61.2
1940 Female, age 85, left hemisphere 59.7
2113 Female, age 91, right hemisphere 59.4
Hippocampus, CA3
nTPM: 62.0
1867 Male, age 76, both hemispheres 67.3
2436 Male, age 74, both hemispheres 62.9
1891 Female, age 85, both hemispheres 62.8
2620 Female, age 94, left hemisphere 62.2
2137 Male, age 80, left hemisphere 61.7
2861 Female, age 67, both hemispheres 55.0
Parahippocampal cortex
nTPM: 60.6
1933 Female, age 85, both hemispheres 63.3
1850 Male, age 80, both hemispheres 62.9
1990 Female, age 91, right hemisphere 62.4
2018 Male, age 76, both hemispheres 61.1
2692 Male, age 74, both hemispheres 60.8
2693 Female, age 94, both hemispheres 60.2
2250 Female, age 67, right hemisphere 60.1
2532 Female, age 72, left hemisphere 59.1
2245 Female, age 91, both hemispheres 58.6
2622 Female, age 67, right hemisphere 57.3
Perirhinal gyrus
nTPM: 61.3
1847 Female, age 91, left hemisphere 62.9
1841 Female, age 85, right hemisphere 62.0
1794 Male, age 80, right hemisphere 61.8
2521 Female, age 94, right hemisphere 60.1
2848 Male, age 76, right hemisphere 59.9
Subiculum
nTPM: 62.9
1901 Male, age 80, both hemispheres 64.2
2042 Male, age 76, both hemispheres 64.2
2619 Male, age 74, both hemispheres 62.6
1977 Female, age 85, both hemispheres 62.4
2729 Female, age 91, right hemisphere 62.4
2438 Female, age 94, left hemisphere 61.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 79.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 79.9
Samples: 197

Max nTPM: 238.9
Min nTPM: 15.9
Std nTPM: 21.6
Median nTPM: 76.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 238.9
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 143.6
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 137.6
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 136.0
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 128.7
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 126.2
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 124.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 121.9
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 117.8
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 116.3
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 115.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 180.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 180.6
FF:10169-103B7 60 years, female 205.0
FF:10153-102I9 76 years, female 156.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 28.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 28.6
Samples: 4

Max nTPM: 38.4
Min nTPM: 23.8
Sample A Female 38.4
Sample B Female 23.8
Sample C Male 27.8
Sample D Male 24.3
Entorhinal cortex
nTPM: 20.7
Samples: 4

Max nTPM: 24.9
Min nTPM: 18.9
Sample A Female 19.3
Sample B Female 24.9
Sample C Male 18.9
Sample D Male 19.7
Subiculum
nTPM: 18.2
Samples: 4

Max nTPM: 20.6
Min nTPM: 15.0
Sample A Female 20.6
Sample B Female 19.8
Sample C Male 15.0
Sample D Male 17.5
Ventral hippocampus
nTPM: 21.5
Samples: 4

Max nTPM: 27.6
Min nTPM: 18.2
Sample A Female 27.6
Sample B Female 18.3
Sample C Male 18.2
Sample D Male 22.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 43.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 37.7
Samples: 4

Max nTPM: 42.1
Min nTPM: 33.0
Sample A Male 34.8
Sample B Male 42.1
Sample C Female 41.0
Sample D Female 33.0
Hippocampal formation
nTPM: 43.1
Samples: 4

Max nTPM: 50.6
Min nTPM: 37.9
Sample A Male 50.6
Sample B Male 37.9
Sample C Female 41.6
Sample D Female 42.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.3
73930820 Antisense, RP_051214_04_C04, Mouse strain C57BL/6J (56 days, male) 0.3
70303534 Antisense, RP_050609_01_F12, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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