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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.9 nTPM
HPA:16.9 nTPM
GTEx:13.8 nTPM
FANTOM5:48.2 Scaled Tags Per Million
Pig:30.4 nTPM
Mouse:9.6 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 16.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.1
1870 Female, age 42, unknown 18.2
1830 Male, age 51, unknown 18.1
1833 Male, age 53, unknown 17.1
2019 Male, age 18, unknown 16.0
2219 Male, age 76, both hemispheres 15.2
2828 Female, age 72, unknown 15.0
2666 Male, age 74, left hemisphere 13.9
2411 Female, age 72, unknown 13.1
2586 Male, age 75, left hemisphere 12.7
1827 Male, age 72, unknown 11.7
Dorsal raphe nucleus
nTPM: 12.6
2750 Male, age 76, both hemispheres 15.4
2016 Female, age 72, unknown 14.2
1828 Male, age 53, unknown 13.7
2047 Male, age 72, unknown 11.3
2298 Female, age 72, unknown 8.3
Inferior colliculus
nTPM: 11.2
2849 Male, age 72, unknown 12.5
1848 Female, age 42, unknown 11.9
1890 Male, age 53, unknown 11.1
2097 Female, age 72, unknown 9.2
Median raphe nucleus
nTPM: 11.4
2220 Male, age 76, midline 11.4
Pedunculopontine tegmental nucleus
nTPM: 16.9
2338 Male, age 61, both hemispheres 23.0
2334 Male, age 80, both hemispheres 14.8
1921 Female, age 85, both hemispheres 12.7
Periaquaductal grey, anterior
nTPM: 10.6
1795 Male, age 51, unknown 11.2
2502 Female, age 75, unknown 10.4
1947 Male, age 18, unknown 10.1
Periaquaductal grey, dorsal
nTPM: 11.6
2850 Male, age 76, both hemispheres 13.7
1831 Male, age 72, unknown 12.0
2464 Female, age 72, unknown 11.4
1840 Male, age 53, unknown 9.3
Periaquaductal grey, lateral
nTPM: 12.3
2053 Male, age 18, unknown 12.5
2272 Male, age 74, both hemispheres 12.3
2140 Male, age 76, both hemispheres 12.0
Pretectal area
nTPM: 11.7
2407 Male, age 75, both hemispheres 15.3
2667 Female, age 75, unknown 14.7
1815 Male, age 53, unknown 13.4
2316 Male, age 76, right hemisphere 12.3
2825 Male, age 18, unknown 11.5
1817 Female, age 42, unknown 11.4
2273 Male, age 74, both hemispheres 11.2
2224 Female, age 72, unknown 10.9
2007 Male, age 72, unknown 10.6
1944 Female, age 72, unknown 9.9
1816 Male, age 51, unknown 7.7
Red nucleus
nTPM: 16.5
1865 Male, age 51, unknown 20.8
1904 Male, age 53, unknown 18.4
2823 Male, age 76, right hemisphere 17.8
2769 Male, age 72, unknown 17.2
1954 Female, age 42, unknown 16.9
1821 Female, age 72, unknown 16.8
2227 Male, age 72, unknown 16.5
2588 Male, age 74, left hemisphere 16.2
2503 Female, age 72, unknown 15.4
2725 Female, age 75, unknown 14.9
2785 Male, age 18, unknown 14.5
2584 Male, age 75, left hemisphere 12.6
Substantia nigra
nTPM: 13.3
2409 Female, age 72, unknown 19.3
2699 Male, age 18, unknown 16.7
2583 Male, age 75, right hemisphere 14.1
2590 Female, age 75, unknown 12.9
1889 Female, age 72, unknown 12.7
1851 Male, age 51, unknown 12.2
2665 Male, age 74, both hemispheres 11.8
2241 Male, age 72, unknown 11.6
1941 Male, age 53, unknown 11.3
1916 Female, age 42, unknown 10.6
Superior colliculus
nTPM: 13.1
1913 Female, age 42, unknown 20.0
1995 Male, age 72, unknown 17.8
1895 Male, age 76, right hemisphere 14.1
2587 Male, age 74, left hemisphere 12.8
1839 Male, age 51, unknown 12.5
2668 Female, age 75, unknown 11.6
2664 Male, age 75, both hemispheres 11.0
2261 Male, age 18, unknown 10.9
2087 Female, age 72, unknown 10.3
1796 Male, age 53, unknown 10.1
Ventral tegmental area
nTPM: 13.7
2223 Female, age 72, unknown 16.3
2021 Male, age 53, unknown 14.8
2410 Female, age 72, unknown 13.3
1942 Male, age 51, unknown 13.1
2218 Male, age 76, both hemispheres 13.0
1915 Female, age 42, unknown 11.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 13.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.8
Samples: 139

Max nTPM: 25.1
Min nTPM: 5.3
Std nTPM: 3.4
Median nTPM: 13.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 25.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 22.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 22.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 21.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 21.4
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 21.0
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 20.5
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 19.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 19.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 19.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 19.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 48.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 48.2
FF:10158-103A5 76 years, female 48.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 30.4
Pig sample Sample description nTPM
Midbrain
nTPM: 25.7
Samples: 4

Max nTPM: 36.9
Min nTPM: 19.5
Sample A Female 36.9
Sample B Female 26.3
Sample C Male 19.9
Sample D Male 19.5
Periaqueductal gray
nTPM: 25.3
Samples: 3

Max nTPM: 25.9
Min nTPM: 24.9
Sample B Female 25.9
Sample C Male 25.2
Sample D Male 24.9
Substantia nigra
nTPM: 30.4
Samples: 4

Max nTPM: 38.9
Min nTPM: 23.7
Sample A Female 23.7
Sample B Female 29.0
Sample C Male 29.8
Sample D Male 38.9
Superior colliculi
nTPM: 22.7
Samples: 4

Max nTPM: 26.9
Min nTPM: 18.9
Sample A Female 22.6
Sample B Female 18.9
Sample C Male 22.3
Sample D Male 26.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.6
Samples: 4

Max nTPM: 10.5
Min nTPM: 8.8
Sample A Male 9.6
Sample B Male 10.5
Sample C Female 9.6
Sample D Female 8.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
75990529 Antisense, RP_060608_01_D01, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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