ABOUTMENU
HELP
NEWS
MTSS1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
Mouse brain, Intensity
Hippocampal formationi 		8.788
RNA expressioni
Consensus:16.3 nTPM
HPA:16.3 nTPM
GTEx:20.6 nTPM
FANTOM5:33.4 Scaled Tags Per Million
Pig:27.9 nTPM
Mouse:18.7 nTPM
Allen mouse:1.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA075540
Glial cells Low
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA064003
Hippocampal formation mean intensity 8.788
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 3.831
Molecular layer of the dentate gyrus 3.894
Granular dentate gyrus 5.231
CA1 - oriens layer 6.118
CA1 - pyramidal layer 7.483
CA1 - radiatum layer 4.284
CA2 - oriens layer 5.519
CA2 - pyramidal layer 7.570
CA2 - radiatum layer 8.788
CA3 - oriens layer 2.939
CA3 - pyramidal layer 3.807
CA3 - radiatum layer 6.191
Stratum lucidum 3.818
Lacunosum moleculare 3.817
Subiculum 5.445

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 16.3
Sample id Sample description nTPM
Hippocampus
nTPM: 10.8
2621 Female, age 67, right hemisphere 14.5
2529 Female, age 94, left hemisphere 14.4
1911 Female, age 85, right hemisphere 12.3
1855 Male, age 76, left hemisphere 8.6
2148 Female, age 91, left hemisphere 7.8
1898 Male, age 80, left hemisphere 7.4
Dentate gyrus
nTPM: 9.9
2530 Female, age 94, left hemisphere 14.3
2246 Female, age 85, both hemispheres 12.1
2010 Male, age 76, both hemispheres 9.8
2528 Male, age 74, both hemispheres 9.6
2531 Female, age 67, both hemispheres 8.4
1927 Female, age 91, both hemispheres 5.0
Entorhinal gyrus
nTPM: 16.3
2613 Female, age 94, left hemisphere 19.0
2117 Female, age 91, right hemisphere 18.0
1787 Male, age 76, left hemisphere 17.2
2764 Male, age 80, right hemisphere 16.5
2686 Male, age 75, right hemisphere 15.0
1938 Female, age 85, left hemisphere 12.3
Hippocampus, CA1
nTPM: 8.5
2082 Female, age 91, right hemisphere 12.2
2527 Male, age 74, both hemispheres 10.3
1873 Female, age 85, both hemispheres 8.7
2045 Male, age 76, both hemispheres 7.3
2749 Male, age 80, left hemisphere 3.9
Hippocampus, CA2
nTPM: 10.8
2437 Female, age 94, left hemisphere 16.1
2113 Female, age 91, right hemisphere 12.0
1940 Female, age 85, left hemisphere 11.5
2249 Male, age 74, both hemispheres 8.8
1892 Male, age 76, both hemispheres 8.2
1963 Male, age 80, left hemisphere 8.2
Hippocampus, CA3
nTPM: 8.3
1891 Female, age 85, both hemispheres 13.4
2436 Male, age 74, both hemispheres 11.0
1867 Male, age 76, both hemispheres 10.7
2861 Female, age 67, both hemispheres 7.0
2620 Female, age 94, left hemisphere 4.9
2137 Male, age 80, left hemisphere 2.7
Parahippocampal cortex
nTPM: 13.7
2692 Male, age 74, both hemispheres 16.8
2018 Male, age 76, both hemispheres 16.7
2532 Female, age 72, left hemisphere 15.1
2622 Female, age 67, right hemisphere 13.7
2245 Female, age 91, both hemispheres 13.2
2693 Female, age 94, both hemispheres 13.1
1933 Female, age 85, both hemispheres 12.7
1990 Female, age 91, right hemisphere 12.5
1850 Male, age 80, both hemispheres 12.0
2250 Female, age 67, right hemisphere 11.5
Perirhinal gyrus
nTPM: 11.5
2848 Male, age 76, right hemisphere 15.6
1841 Female, age 85, right hemisphere 11.4
2521 Female, age 94, right hemisphere 11.0
1794 Male, age 80, right hemisphere 10.1
1847 Female, age 91, left hemisphere 9.2
Subiculum
nTPM: 15.8
2438 Female, age 94, left hemisphere 21.2
2042 Male, age 76, both hemispheres 18.9
2619 Male, age 74, both hemispheres 18.3
1977 Female, age 85, both hemispheres 14.7
1901 Male, age 80, both hemispheres 13.4
2729 Female, age 91, right hemisphere 8.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 20.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 20.6
Samples: 197

Max nTPM: 46.7
Min nTPM: 8.2
Std nTPM: 6.4
Median nTPM: 19.9
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 46.7
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 41.1
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 38.7
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 37.8
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 36.6
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 35.5
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 35.4
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 33.0
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 31.3
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 31.2
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 30.6
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 33.4
FF:10153-102I9 76 years, female 44.9
FF:10169-103B7 60 years, female 21.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 27.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 25.8
Samples: 4

Max nTPM: 30.5
Min nTPM: 19.8
Sample A Female 30.5
Sample B Female 28.0
Sample C Male 24.8
Sample D Male 19.8
Entorhinal cortex
nTPM: 21.0
Samples: 4

Max nTPM: 24.6
Min nTPM: 18.3
Sample A Female 24.6
Sample B Female 18.3
Sample C Male 22.0
Sample D Male 19.2
Subiculum
nTPM: 27.9
Samples: 4

Max nTPM: 34.7
Min nTPM: 23.1
Sample A Female 34.7
Sample B Female 25.5
Sample C Male 28.4
Sample D Male 23.1
Ventral hippocampus
nTPM: 27.5
Samples: 4

Max nTPM: 31.8
Min nTPM: 21.5
Sample A Female 26.8
Sample B Female 21.5
Sample C Male 31.8
Sample D Male 29.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 18.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 18.7
Samples: 4

Max nTPM: 22.9
Min nTPM: 15.9
Sample A Male 15.9
Sample B Male 17.0
Sample C Female 18.9
Sample D Female 22.9
Hippocampal formation
nTPM: 17.0
Samples: 4

Max nTPM: 18.4
Min nTPM: 16.1
Sample A Male 16.2
Sample B Male 18.4
Sample C Female 16.1
Sample D Female 17.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.9
1776 Antisense, RP_040604_01_B06, Mouse strain C57BL/6J (56 days, male) 1.9
1777 Antisense, RP_040604_01_B06, Mouse strain C57BL/6J (56 days, male) 0.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.