ABOUTMENU
HELP
NEWS
PAQR8
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:110.7 nTPM
HPA:110.7 nTPM
GTEx:76.5 nTPM
FANTOM5:414.2 Scaled Tags Per Million
Pig:56.5 nTPM
Mouse:99.2 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 110.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 95.6
2019 Male, age 18, unknown 106.4
1870 Female, age 42, unknown 106.0
1830 Male, age 51, unknown 102.7
1833 Male, age 53, unknown 102.7
2411 Female, age 72, unknown 102.0
2586 Male, age 75, left hemisphere 95.8
2828 Female, age 72, unknown 94.3
2666 Male, age 74, left hemisphere 84.4
2219 Male, age 76, both hemispheres 84.1
1827 Male, age 72, unknown 77.9
Dorsal raphe nucleus
nTPM: 91.4
2750 Male, age 76, both hemispheres 117.2
1828 Male, age 53, unknown 93.0
2047 Male, age 72, unknown 89.3
2016 Female, age 72, unknown 84.0
2298 Female, age 72, unknown 73.3
Inferior colliculus
nTPM: 87.7
1848 Female, age 42, unknown 95.1
1890 Male, age 53, unknown 93.0
2097 Female, age 72, unknown 86.7
2849 Male, age 72, unknown 75.8
Median raphe nucleus
nTPM: 85.4
2220 Male, age 76, midline 85.4
Pedunculopontine tegmental nucleus
nTPM: 86.3
2334 Male, age 80, both hemispheres 96.7
1921 Female, age 85, both hemispheres 85.6
2338 Male, age 61, both hemispheres 76.7
Periaquaductal grey, anterior
nTPM: 80.3
2502 Female, age 75, unknown 88.4
1947 Male, age 18, unknown 77.5
1795 Male, age 51, unknown 74.9
Periaquaductal grey, dorsal
nTPM: 75.8
2464 Female, age 72, unknown 87.2
1831 Male, age 72, unknown 76.3
1840 Male, age 53, unknown 70.7
2850 Male, age 76, both hemispheres 69.1
Periaquaductal grey, lateral
nTPM: 74.6
2053 Male, age 18, unknown 83.5
2272 Male, age 74, both hemispheres 71.1
2140 Male, age 76, both hemispheres 69.2
Pretectal area
nTPM: 88.0
2667 Female, age 75, unknown 100.5
1817 Female, age 42, unknown 99.9
1815 Male, age 53, unknown 96.9
2007 Male, age 72, unknown 90.2
1944 Female, age 72, unknown 88.8
1816 Male, age 51, unknown 88.0
2316 Male, age 76, right hemisphere 85.6
2407 Male, age 75, both hemispheres 83.7
2273 Male, age 74, both hemispheres 80.4
2825 Male, age 18, unknown 80.2
2224 Female, age 72, unknown 73.5
Red nucleus
nTPM: 110.7
1904 Male, age 53, unknown 124.9
2227 Male, age 72, unknown 122.4
1821 Female, age 72, unknown 120.0
2769 Male, age 72, unknown 120.0
1865 Male, age 51, unknown 119.9
2823 Male, age 76, right hemisphere 118.1
1954 Female, age 42, unknown 115.8
2503 Female, age 72, unknown 113.4
2588 Male, age 74, left hemisphere 105.9
2785 Male, age 18, unknown 104.7
2584 Male, age 75, left hemisphere 84.4
2725 Female, age 75, unknown 78.5
Substantia nigra
nTPM: 86.7
1889 Female, age 72, unknown 98.1
2583 Male, age 75, right hemisphere 93.8
1851 Male, age 51, unknown 90.7
2409 Female, age 72, unknown 88.6
2699 Male, age 18, unknown 88.6
1916 Female, age 42, unknown 84.2
2241 Male, age 72, unknown 83.1
2590 Female, age 75, unknown 81.1
2665 Male, age 74, both hemispheres 80.3
1941 Male, age 53, unknown 78.6
Superior colliculus
nTPM: 92.2
1995 Male, age 72, unknown 108.2
2668 Female, age 75, unknown 106.8
1913 Female, age 42, unknown 105.4
2087 Female, age 72, unknown 94.1
2587 Male, age 74, left hemisphere 89.8
1839 Male, age 51, unknown 87.2
2664 Male, age 75, both hemispheres 85.9
1895 Male, age 76, right hemisphere 84.9
2261 Male, age 18, unknown 82.4
1796 Male, age 53, unknown 77.5
Ventral tegmental area
nTPM: 91.7
2223 Female, age 72, unknown 112.4
2410 Female, age 72, unknown 101.0
2218 Male, age 76, both hemispheres 86.6
2021 Male, age 53, unknown 85.6
1942 Male, age 51, unknown 82.4
1915 Female, age 42, unknown 82.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 76.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 76.5
Samples: 139

Max nTPM: 231.2
Min nTPM: 27.6
Std nTPM: 30.7
Median nTPM: 74.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 231.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 181.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 164.1
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 155.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 148.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 134.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 131.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 130.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 128.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 126.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 122.7
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 414.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 414.2
FF:10158-103A5 76 years, female 414.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 56.5
Pig sample Sample description nTPM
Midbrain
nTPM: 56.6
Samples: 4

Max nTPM: 70.8
Min nTPM: 37.4
Sample A Female 70.8
Sample B Female 63.3
Sample C Male 54.7
Sample D Male 37.4
Periaqueductal gray
nTPM: 52.4
Samples: 3

Max nTPM: 61.1
Min nTPM: 42.8
Sample B Female 61.1
Sample C Male 53.2
Sample D Male 42.8
Substantia nigra
nTPM: 54.6
Samples: 4

Max nTPM: 59.5
Min nTPM: 49.0
Sample A Female 52.9
Sample B Female 49.0
Sample C Male 56.8
Sample D Male 59.5
Superior colliculi
nTPM: 44.0
Samples: 4

Max nTPM: 52.5
Min nTPM: 32.1
Sample A Female 42.2
Sample B Female 32.1
Sample C Male 49.2
Sample D Male 52.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 99.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 99.2
Samples: 4

Max nTPM: 114.1
Min nTPM: 87.7
Sample A Male 87.7
Sample B Male 88.4
Sample C Female 114.1
Sample D Female 106.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
69236712 Antisense, RP_050331_01_A02, Mouse strain C57BL/6J (56 days, male) 1.3
74724530 Antisense, RP_060220_04_A02, Mouse strain C57BL/6J (56 days, male) 0.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.