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NPTX1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
Neuronal projections: High
Synapses: High
Mouse brain, Intensity
Hippocampal formationi 		232.597
RNA expressioni
Consensus:107.8 nTPM
HPA:107.8 nTPM
GTEx:31.1 nTPM
FANTOM5:92.3 Scaled Tags Per Million
Pig:131.3 nTPM
Mouse:173.4 nTPM
Allen mouse:11.3 Expression energy

HIPPOCAMPUS - Extended tissue profilei , antibody HPA077062
Glial cells Not detected
Neuronal cells High
Neuronal projections High
Synapses High

HIPPOCAMPUS - Antibody stainingi
Antibody HPA077062
Glial cells Medium
Neuronal cells High



HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA077062
Hippocampal formation mean intensity 232.597
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 194.649
Molecular layer of the dentate gyrus 70.078
Granular dentate gyrus 99.874
CA1 - oriens layer 111.074
CA1 - pyramidal layer 70.723
CA1 - radiatum layer 146.404
CA2 - oriens layer 125.037
CA2 - pyramidal layer 77.504
CA2 - radiatum layer 179.710
CA3 - oriens layer 232.597
CA3 - pyramidal layer 121.522
CA3 - radiatum layer 230.261
Stratum lucidum 229.438
Lacunosum moleculare 50.758
Subiculum 28.728

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 107.8
Sample id Sample description nTPM
Hippocampus
nTPM: 79.4
1898 Male, age 80, left hemisphere 143.5
2148 Female, age 91, left hemisphere 117.9
1855 Male, age 76, left hemisphere 103.9
2621 Female, age 67, right hemisphere 89.0
2529 Female, age 94, left hemisphere 11.3
1911 Female, age 85, right hemisphere 10.6
Dentate gyrus
nTPM: 106.6
2531 Female, age 67, both hemispheres 144.7
2010 Male, age 76, both hemispheres 129.4
2530 Female, age 94, left hemisphere 113.5
1927 Female, age 91, both hemispheres 91.7
2528 Male, age 74, both hemispheres 86.3
2246 Female, age 85, both hemispheres 74.1
Entorhinal gyrus
nTPM: 107.8
2613 Female, age 94, left hemisphere 172.0
2764 Male, age 80, right hemisphere 140.7
1938 Female, age 85, left hemisphere 123.4
2686 Male, age 75, right hemisphere 93.0
1787 Male, age 76, left hemisphere 75.7
2117 Female, age 91, right hemisphere 42.0
Hippocampus, CA1
nTPM: 83.2
2045 Male, age 76, both hemispheres 112.9
1873 Female, age 85, both hemispheres 90.5
2082 Female, age 91, right hemisphere 74.6
2749 Male, age 80, left hemisphere 69.9
2527 Male, age 74, both hemispheres 67.8
Hippocampus, CA2
nTPM: 66.3
1963 Male, age 80, left hemisphere 145.8
1892 Male, age 76, both hemispheres 87.2
1940 Female, age 85, left hemisphere 49.6
2437 Female, age 94, left hemisphere 44.4
2113 Female, age 91, right hemisphere 41.8
2249 Male, age 74, both hemispheres 29.1
Hippocampus, CA3
nTPM: 72.7
2861 Female, age 67, both hemispheres 183.5
2620 Female, age 94, left hemisphere 126.3
1867 Male, age 76, both hemispheres 43.2
2436 Male, age 74, both hemispheres 34.0
1891 Female, age 85, both hemispheres 25.0
2137 Male, age 80, left hemisphere 24.4
Parahippocampal cortex
nTPM: 76.7
1850 Male, age 80, both hemispheres 126.3
2622 Female, age 67, right hemisphere 94.6
2532 Female, age 72, left hemisphere 89.4
1990 Female, age 91, right hemisphere 84.5
2692 Male, age 74, both hemispheres 83.7
1933 Female, age 85, both hemispheres 78.7
2693 Female, age 94, both hemispheres 73.7
2245 Female, age 91, both hemispheres 57.2
2018 Male, age 76, both hemispheres 40.1
2250 Female, age 67, right hemisphere 39.2
Perirhinal gyrus
nTPM: 103.1
1847 Female, age 91, left hemisphere 146.1
1794 Male, age 80, right hemisphere 138.2
2848 Male, age 76, right hemisphere 81.1
2521 Female, age 94, right hemisphere 79.8
1841 Female, age 85, right hemisphere 70.3
Subiculum
nTPM: 32.5
1977 Female, age 85, both hemispheres 78.5
2729 Female, age 91, right hemisphere 59.1
2619 Male, age 74, both hemispheres 29.5
1901 Male, age 80, both hemispheres 18.3
2042 Male, age 76, both hemispheres 6.3
2438 Female, age 94, left hemisphere 3.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 31.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 31.1
Samples: 197

Max nTPM: 267.1
Min nTPM: 0.1
Std nTPM: 44.1
Median nTPM: 12.8
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 267.1
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 225.4
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 223.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 178.4
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 176.6
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 145.2
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 141.7
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 137.2
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 131.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 119.6
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 113.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 92.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 92.3
FF:10169-103B7 60 years, female 117.1
FF:10153-102I9 76 years, female 67.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 131.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 131.3
Samples: 4

Max nTPM: 204.2
Min nTPM: 39.9
Sample A Female 168.8
Sample B Female 204.2
Sample C Male 39.9
Sample D Male 112.2
Entorhinal cortex
nTPM: 67.4
Samples: 4

Max nTPM: 76.0
Min nTPM: 60.6
Sample A Female 76.0
Sample B Female 70.4
Sample C Male 62.5
Sample D Male 60.6
Subiculum
nTPM: 46.7
Samples: 4

Max nTPM: 55.0
Min nTPM: 37.5
Sample A Female 55.0
Sample B Female 40.0
Sample C Male 54.2
Sample D Male 37.5
Ventral hippocampus
nTPM: 131.0
Samples: 4

Max nTPM: 175.0
Min nTPM: 80.3
Sample A Female 175.0
Sample B Female 80.3
Sample C Male 156.7
Sample D Male 112.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 173.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 95.4
Samples: 4

Max nTPM: 99.4
Min nTPM: 93.1
Sample A Male 95.2
Sample B Male 93.1
Sample C Female 99.4
Sample D Female 93.7
Hippocampal formation
nTPM: 173.4
Samples: 4

Max nTPM: 226.2
Min nTPM: 115.3
Sample A Male 115.3
Sample B Male 206.2
Sample C Female 226.2
Sample D Female 145.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 11.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 11.3
71234666 Antisense, RP_050505_02_H05, Mouse strain C57BL/6J (56 days, male) 14.5
73520998 Antisense, RP_051101_02_H05, Mouse strain C57BL/6J (56 days, male) 8.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.